Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1717 ATGGTTTTCTCTTCTATTCCACTCTATGTAGATCCTCCCAATTGGCACCAGCAATCAAACCAGAACCATCATCAAGTGAATGGAAATGGTAGCCCTCAGATGCTTCCACCTTTGCCCCCACAGGCATCTCTTTCTGGAGGTGGAGGTGCGACTGTGGGGTCAATGAGGCCGGGCTCGATGGCAGATCGAGCCCGGCTAGCTAAGTTGCCTCCTCCTGAGACCGCTTTAAAGTGTCCTCGTTGCGACTCCATCAACACTAAATTCTGCTACTTCAACAACTACAGCCTCACGCAACCACGCCACTTCTGCAAGACTTGTAGGCGTTACTGGACTAGAGGTGGTGCTCTCAGAAACGTTCCTGTGGGTGGAGGATGCCGTAGAAACAAGAAGAATAAAAGGAGTCGCTCTAAATCTCCATCATCATCTGAGAAACAAACCCTTTCTAGTTCCACAAGTGCAATCCCTTCAGGTGGTACCACTCATGAGCTTATTGGTCACATGACTCAACCACCTAACCTTCCTTTCATGGCCTCTCTACAGAACCAGATGAACCGTTATGGTGTTGCAAACATGGCTGGTCTGAACTTACGTGAGATTCAAGGACAAACGGATCACATGGGGTTTCAAATTGGTTGTGGTAGTAATTCAGGTGCTGGCGGCAGTGGTGGTGGTGGTGGATTGGAGCAGTGGCGGTCACAGCAGTTTCCTTTCATGAATGGTTTTGAGTCAACTTCAGTTACTTCATACCCTTTTCAAAATGAGAATGTTGAAGCAAATTCTGGGTTTGTTGGAGATATAGCTGCAAGTTCCAGGGTTTATAATCAGCAACCACCAGTTAAAATGGAAGAGAATAGAGCTCTAAATTTGTTAAGATCATCTATGAGTAATACCGTCTCAGAAAATAACCAATACTATTCATGGACTGATTTATCAGGTCTTCCTTCTTCAACTACTGCTAGTCATCTCTTGTGA 972 0.4578 MVFSSIPLYVDPPNWHQQSNQNHHQVNGNGSPQMLPPLPPQASLSGGGGATVGSMRPGSMADRARLAKLPPPETALKCPRCDSINTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPSSSEKQTLSSSTSAIPSGGTTHELIGHMTQPPNLPFMASLQNQMNRYGVANMAGLNLREIQGQTDHMGFQIGCGSNSGAGGSGGGGGLEQWRSQQFPFMNGFESTSVTSYPFQNENVEANSGFVGDIAASSRVYNQQPPVKMEENRALNLLRSSMSNTVSENNQYYSWTDLSGLPSSTTASHLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1717 323 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Lan8g1717 323 MobiDBLite consensus disorder prediction 120 169 - -
Lan8g1717 323 MobiDBLite consensus disorder prediction 13 32 - -
Lan8g1717 323 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 7 318 - -
Lan8g1717 323 MobiDBLite consensus disorder prediction 140 166 - -
Lan8g1717 323 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 318 IPR045174 GO:0003700|GO:0006355
Lan8g1717 323 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Lan8g1717 323 MobiDBLite consensus disorder prediction 13 57 - -
Lan8g1717 323 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1717 Lan-Chr8 23991919 23993653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1717 39 322 C2C2-Dof Transcription Factor Family AT3G55370 41.026 1.91e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan8g1717 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1717 - - gmx:100816635 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0244 7 1529068 1530781 Lan8g1717 8 23991919 23993653 LSH
Lan6g1972 6 30638870 30640530 Lan8g1717 8 23991919 23993653 PCT
Lan8g1717 8 23991919 23993653 Lan6g1972 6 30638870 30640530 PCT