Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1688 ATGGATATGGATCATCCTTCTAATGGACAAACCCAGCAAATCTCAAACCAGACATTGGAAAACATTGTAGGTTGTTCAAAAGCACAACAAGACAAGAAACCAAAACCTCAGCCAGAACAAGCTCAAAAGTGTCCAAGATGTGATTCCACCAACACCAAATTCTGTTACTACAACAACTATAGCCTTTCTCAGCCAAGGTATTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGAACTCTGAGGAATGTTCCAGTGGGTGGAGGATGCAGGAAAAACAAGAGATCATCTTCATCTACAAAGAGGGTTCAAGATCAAACATTTACACCAAACCCAAACCCACTCATTGGCCTCACACCAATATCTTATGATTTTAATGACCTAAACCTTGCATTAGCTAGGCTCCAAAAAGGAGCAATGGGTTATGATGACCATGATCTTTCAATCATGGGGAACAACACAAACACAAGTACCCCATGTGATAACATAGTTGCCAATTTGGGTATGAACCCTTCAAACCCTGGTTTCTTAGATGCACTTAGAACTGGCTTCCTTGGTTCTCACAACAACAACAATATTATGAAAAATCTGTACTTTGGATATGGGAATGGTGAGAATATGGGTGAGGTTGAGAATGCAAACGATGGTTGTGGAGAGATGATGTTATCTTATGATCATGAACAACAAATGAATATTGTAACTACCCAAGCAGTGTCTATGACTACTATGAAGCATGAACTGTGTAATGCAAGGGAACAAAGTGAAAGTAAGGTGCTTTGGGGTTTCCCATGGCAACTAAATGGAGGAGGAGACCCAAACATGGCTGAAACAATTGACTCAGGTAGAGCAAATTGGAACAATGGGTTCACTTCATCATGGCATGGACTTCTCAACAGTTTTCATCTCATGTTTTACTTGAATATCAGTCTTAAGACTTTTGATCCTCTTGAGTGA 957 0.4002 MDMDHPSNGQTQQISNQTLENIVGCSKAQQDKKPKPQPEQAQKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSTKRVQDQTFTPNPNPLIGLTPISYDFNDLNLALARLQKGAMGYDDHDLSIMGNNTNTSTPCDNIVANLGMNPSNPGFLDALRTGFLGSHNNNNIMKNLYFGYGNGENMGEVENANDGCGEMMLSYDHEQQMNIVTTQAVSMTTMKHELCNAREQSESKVLWGFPWQLNGGGDPNMAETIDSGRANWNNGFTSSWHGLLNSFHLMFYLNISLKTFDPLE* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1688 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 302 IPR045174 GO:0003700|GO:0006355
Lan8g1688 318 MobiDBLite consensus disorder prediction 1 46 - -
Lan8g1688 318 MobiDBLite consensus disorder prediction 1 25 - -
Lan8g1688 318 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Lan8g1688 318 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 10 302 - -
Lan8g1688 318 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Lan8g1688 318 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Lan8g1688 318 MobiDBLite consensus disorder prediction 88 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1688 Lan-Chr8 23767509 23769193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1688 12 300 C2C2-Dof Transcription Factor Family AT2G28510 39.940 1.75e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan8g1688 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1688 - - lang:109353359 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0274 7 1758975 1760701 Lan8g1688 8 23767509 23769193 LSH
Lan8g1688 8 23767509 23769193 Lan13g0362 13 2422755 2424488 LSH
Lan10g0120 10 740918 743400 Lan8g1688 8 23767509 23769193 PCT
Lan3g0073 3 496569 497382 Lan8g1688 8 23767509 23769193 PCT
Lan8g1688 8 23767509 23769193 Lan10g0120 10 740918 743400 PCT
Lan8g1688 8 23767509 23769193 Lan3g0073 3 496569 497382 PCT