Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1329 ATGGTTCTCATCAATTCCACTCAAACCAAACATGTCTCTACCAAGCTCCCATTGTTTTTCAGAACCCACTTCACCACTTCACCCAACAAGCCACACCTTCCATTTCCACCACTCTATTCGAAAACACACTCACAGCTCCAAAACAATGGAGGGTTCTGCTTCCAAGACTGTGTCCCCCTCTTGCAACACCTCAGGGATCACAAGGACATAAACTGTGGCAGAACCCTTCATTCTCTCTTTATCAAGAGTGCCTTAGACAAAGATGTCTTTGTACAGAACAATATGGTCAGGTTTTATGGTGATATTGGAGAAATCGTGAATGCACATAACGTGTTTGATGAAATTCCTGATCCGAGTTTGATTTGTTGGACCAGCTTGGTTTCGTGCTATGTCCATGTGGGGCAGCATGAAGTGGGTCTGAGGTTGTTTTGTGGACTTTGTCGATCCGGGATGCACCCCAACGATTTTGGTTTCTCTGTGGCACTTAAGGCGTGTAGGGTGATGCGTGATCACCTCATGGGTAAGCTCATTCATGGTTTGATAGTCAAAACTGGATTTGATTCACATGATTTTTGTGGTGCTTCAATTCTTCACATGTATGCTGAATGTGGAGATATTGAGAATGCGAGGAAGTTCTTTGATGAGGTTTGTGTGGGAGAAACGTGTGAAGCATTGTGGAATACTTTGCTGAATGCATATGTGCAAATGTCTGATGTGGAGGGAGCTATGAAGTTGTTTCGCGAGATGGGGCACTCTGTTGTGTCACCAAATCGCTTTACTTACACAATCCTTGCTAAACTCTGTGTTGATGTGTTGGATTTTGAACTTGGAAGGTCTGTTCATGGCCAGACTATTAAGATTGGGGTCGAAAATGATGTTGTGGTCGGTGGGGCTCTTGTTGACTCTTATGCAAAACTGGGATTCTTAGAGGATGCTTGTAAAGTGTTTCATATTCTTGAAGAGAAGGACAATGTGGCATTATGTGCTTTATTGGCTGGGTTTAATCAGACTGGAGAGTCTAAGGAAGGACTTGAAATTTATATTGCTTTTCTTTCTGAAGGCAACATACCAGATCCATTTATTTGTGCAACTGTTATTAGTTTGTGCTCAAATTTGGAGACAGTGCTTGCTGGTACCCAAGTTCACTGTGGTATAATCAAACTTGGCTTTAAGATGGATTCATATCTTGGTAGTGCCTTTATCAACATGTATGGAAGCTTTGGGATGACTTCTGATGCTTATAAATGTTTTCTTGAGGTTTGCAATAAGAATGAAATATGTATAAGTGCCATGATGAATAATTTAATTCTCAATTCGAATGATTTGAAAGTTTTAGAGCTGTTTTGTGGGATGAGGGAAGTTGTTGCACAAAGCAATAATGCAATCAGCTATGTTCTACGGGCTTGTGGGAACCTTTTTATGCTTAAAGAAGGAAGATCATTTCATTCTTTCATTATTAAAAATCTTTTTGAAGATGACTCTAGGTTGGGATTAGATAATGCTCTTCTTGAGATGTATATTAGATGTAGAGTTATTGATGATGCAAAGTTAGTCTTCCAAAAGATGCAAATGCCAAATGAGTTTTCCTGGAGTACTATCATATCTGGATGCAGTGAATCAGGGCAGTTAGTAGAGGCTCTGAGGATCTTTAAAGATATGCTTCGATTTTCTAAACCTAGTCAGTTCACCTTAATTAGTGTTATTCAAGCTTGTGCAGAAATAGAGGCACTTGATGTTGGAAAACAGGTCCATTCTTTTATTATGAAAGTTGGATTTGAATATTATCCATTTGTTGGAAGCGCCCTGATTAACATGTATGCAGTATTTAAACACGAAACTTTGAATGCGTTCACGGTATTCTTGTCCATGAAAGAGAAAGATCTTATCTCTTGGAGTGTCATGTTAACTTCATGGGTCCAAAATGGTTATCATGAGGAAGCACTCAAGCTTTTTGCAGAATTCCAAACTGATCCTGTTTTTCAGGTTGACGAATCTATCTTATCCAGCAGTATCTCAGCTGCTGCTGGCTTAGCAGCCCTGGACATAGGCAAATGTTTCCATTCTTGGGTTATCAAACTTGGCTTTGAAATTGATCTTCATGTGGCTTCTTCCATTACAGACATGTATAGTAAATGTGGAAATATTAAAGATGCCTGCAAGTTTTTTAATGCTATCAGTGGCCACAATTTAGTGTCTTGGACAGCTATGATATATGGATATGCGTATCATGGTCTTGGGAAAGAATCTATCGACCTGTTTAACAAGGCTACAGAATTTGGGTTGGAACCTGATGGTGTCACCTTCACTGGGGTTTTAGCTGCATGTAGTCATGCTGGACTGGTTAAGGAGGGTTGGGAACATTTTGAGCACATGAGAAGTAAATACAGCAGTGAAGTAACAATAAATCATTATGCCTGCATGGTTGATCTTCTTGGTCGAGCAGCAAAATTGGAAGAAGCAGAGGTTTTGATAAAGGAAGCTCCATTTCATTCAAAATCTCTTCTTTGGAAGACTTTGCTAGGTGCTTGCTCTAAACATGAGAATGCTGAAATAGGAAACAGAATATCAAAGATGCTGGCTGATATCGAACTAAATGAACCCTCAACCTATGTTCTACTGTCTAACATTTATGCATCAGCATCAATGTGGAAAAATTGCTTAGACTTGAGAAATAAAATGATAAAAGGAAGTGTTAGTAAACAACCTGGTAGTAGTTGGATTCAGTTATTGATTATGCCCACCCTATTTAATAAATCTCAAGTCTCCACTTTTGAGAGAAGAACTTCCAATAAGCCCTACATAGAAACGCAGACCAGCGATAACGGGTCTGTTTACGAATCTTCTATTGAATCTGCAGTTGAATCTTCTGGATACAAGGCTACCTGTTCTCCCTCTTCAAGTGGAGAATCAAATGTCCATGATGGTACACAAGATTCTGAACTATGGGGAGATGATGCAAAAGAGTTGAAGACAGAGATTCTCTAA 2985 0.3953 MVLINSTQTKHVSTKLPLFFRTHFTTSPNKPHLPFPPLYSKTHSQLQNNGGFCFQDCVPLLQHLRDHKDINCGRTLHSLFIKSALDKDVFVQNNMVRFYGDIGEIVNAHNVFDEIPDPSLICWTSLVSCYVHVGQHEVGLRLFCGLCRSGMHPNDFGFSVALKACRVMRDHLMGKLIHGLIVKTGFDSHDFCGASILHMYAECGDIENARKFFDEVCVGETCEALWNTLLNAYVQMSDVEGAMKLFREMGHSVVSPNRFTYTILAKLCVDVLDFELGRSVHGQTIKIGVENDVVVGGALVDSYAKLGFLEDACKVFHILEEKDNVALCALLAGFNQTGESKEGLEIYIAFLSEGNIPDPFICATVISLCSNLETVLAGTQVHCGIIKLGFKMDSYLGSAFINMYGSFGMTSDAYKCFLEVCNKNEICISAMMNNLILNSNDLKVLELFCGMREVVAQSNNAISYVLRACGNLFMLKEGRSFHSFIIKNLFEDDSRLGLDNALLEMYIRCRVIDDAKLVFQKMQMPNEFSWSTIISGCSESGQLVEALRIFKDMLRFSKPSQFTLISVIQACAEIEALDVGKQVHSFIMKVGFEYYPFVGSALINMYAVFKHETLNAFTVFLSMKEKDLISWSVMLTSWVQNGYHEEALKLFAEFQTDPVFQVDESILSSSISAAAGLAALDIGKCFHSWVIKLGFEIDLHVASSITDMYSKCGNIKDACKFFNAISGHNLVSWTAMIYGYAYHGLGKESIDLFNKATEFGLEPDGVTFTGVLAACSHAGLVKEGWEHFEHMRSKYSSEVTINHYACMVDLLGRAAKLEEAEVLIKEAPFHSKSLLWKTLLGACSKHENAEIGNRISKMLADIELNEPSTYVLLSNIYASASMWKNCLDLRNKMIKGSVSKQPGSSWIQLLIMPTLFNKSQVSTFERRTSNKPYIETQTSDNGSVYESSIESAVESSGYKATCSPSSSGESNVHDGTQDSELWGDDAKELKTEIL* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1329 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lan8g1329 994 Pfam PPR repeat 528 555 IPR002885 -
Lan8g1329 994 Pfam PPR repeat 766 794 IPR002885 -
Lan8g1329 994 Pfam PPR repeat 731 760 IPR002885 -
Lan8g1329 994 Pfam PPR repeat 122 150 IPR002885 -
Lan8g1329 994 Pfam PPR repeat 298 322 IPR002885 -
Lan8g1329 994 Pfam PPR repeat 629 655 IPR002885 -
Lan8g1329 994 Gene3D Tetratricopeptide repeat domain 660 944 IPR011990 GO:0005515
Lan8g1329 994 Gene3D Tetratricopeptide repeat domain 42 174 IPR011990 GO:0005515
Lan8g1329 994 Gene3D Tetratricopeptide repeat domain 273 380 IPR011990 GO:0005515
Lan8g1329 994 Gene3D Tetratricopeptide repeat domain 175 272 IPR011990 GO:0005515
Lan8g1329 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 415 924 - -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 224 555 - -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 139 452 - -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 154 - -
Lan8g1329 994 Gene3D Tetratricopeptide repeat domain 497 627 IPR011990 GO:0005515
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 224 555 - -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 139 452 - -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 68 154 - -
Lan8g1329 994 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 415 924 - -
Lan8g1329 994 MobiDBLite consensus disorder prediction 960 977 - -
Lan8g1329 994 MobiDBLite consensus disorder prediction 960 984 - -
Lan8g1329 994 Pfam E motif 846 908 IPR046848 -
Lan8g1329 994 Pfam PPR repeat family 225 268 IPR002885 -
Lan8g1329 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Lan8g1329 994 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Lan8g1329 994 TIGRFAM PPR: pentatricopeptide repeat domain 528 555 IPR002885 -
Lan8g1329 994 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Lan8g1329 994 TIGRFAM PPR: pentatricopeptide repeat domain 731 764 IPR002885 -
Lan8g1329 994 TIGRFAM PPR: pentatricopeptide repeat domain 121 154 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1329 Lan-Chr8 20166013 20169684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1329 227 909 Glycoside Hydrolase AT3G49170 31.903 7.92e-114 369