Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1288 ATGAAGAGGTCTCATGCATCTTCATGTTCATCATCTTCATCTTGTAATGTTGGGTTTGAAACTCCCATTGAAAAAAGAAGGCCTAAGCAACCAAGAAGTAATGTTAAGTCACAACAATGTAATAATCAGAACCAAACCACTGGCAGAAGAAGTTCCATTTATAGAGGAGTTACAAGGCATAGATGGACTGGAAGGTTTGAAGCTCACCTATGGGATAAGAGTTCTTGGAACAGCATTCAGAACAAGAAGGGTAGACAAGTTTATTTGGGAGCATATGATAGTGAAGATGCTGCAGCCCATACCTATGATCTTGCAGCCCTTAAGTATTGGGGAAATGCTGCAACTTTAAATTTCCCGATTGAAACATATAGCAAGGACCTTGAGGAAATGAACAAGATCACAAGAGAAGAATTCTTGGCTAATTTAAGGCGTCAAAGTAGTGGCTTTTCTAGAGGTGTTTCTAAGTATCGTGGGGTAGCAAGGCATCACCATAATGGCCGTTGGGAGGCTCGAATTGGGAGAGTATGTGGTAACAAATACCTTTACTTAGGGACATATAAAACTCAAGAGGAAGCAGCTATAGCATATGATATGGCAGCAATAGAACACAGAGGACTCAATGCTGTGACAAATTTTGACATAAGCAACTACATTGATAAAATAAAGATGAATAATGAGCCATCCCAAGAAGCTGAAACACAAACACAAACAGCTCCTACATCAATTGATTCTGAAGAAGTTGAACAGAAAAACACACCACAACCTCAACCAGAAATTGTAGACAAGGAACCACAACAAATTCAATACACCAATGTTGTTCTAAGTGAGGAATCTTCACAAGTTATTCCTATGGACCATGTTTTTGAGCAGGACATGCCATGGAACTTCATGGATACTAATTTGTCTCAGTTTCAAGACATAGACTTGGGTTTTTGTGAAAAAGAGGATCTTTTAAGCATGTTTGATGGTAAAGGCTTTGAGGATGATATTGATTTTTTGTTCAACACAGAACCTGGTGCTGGTGATTTTAATTTCAATGCAATTTTGGATAGCATTGTTTAG 1062 0.3842 MKRSHASSCSSSSSCNVGFETPIEKRRPKQPRSNVKSQQCNNQNQTTGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDSEDAAAHTYDLAALKYWGNAATLNFPIETYSKDLEEMNKITREEFLANLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAIAYDMAAIEHRGLNAVTNFDISNYIDKIKMNNEPSQEAETQTQTAPTSIDSEEVEQKNTPQPQPEIVDKEPQQIQYTNVVLSEESSQVIPMDHVFEQDMPWNFMDTNLSQFQDIDLGFCEKEDLLSMFDGKGFEDDIDFLFNTEPGAGDFNFNAILDSIV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1288 353 ProSiteProfiles AP2/ERF domain profile. 155 213 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 273 - -
Lan8g1288 353 CDD AP2 154 215 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 SUPERFAMILY DNA-binding domain 154 215 IPR016177 GO:0003677
Lan8g1288 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 273 - -
Lan8g1288 353 ProSiteProfiles AP2/ERF domain profile. 53 119 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 MobiDBLite consensus disorder prediction 1 19 - -
Lan8g1288 353 CDD AP2 52 120 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 Gene3D AP2/ERF domain 154 215 IPR036955 GO:0003700|GO:0006355
Lan8g1288 353 Gene3D AP2/ERF domain 53 121 IPR036955 GO:0003700|GO:0006355
Lan8g1288 353 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Lan8g1288 353 SUPERFAMILY DNA-binding domain 52 121 IPR016177 GO:0003677
Lan8g1288 353 MobiDBLite consensus disorder prediction 33 53 - -
Lan8g1288 353 Pfam AP2 domain 154 204 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 Pfam AP2 domain 53 111 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 SMART rav1_2 155 219 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 SMART rav1_2 53 125 IPR001471 GO:0003700|GO:0006355
Lan8g1288 353 MobiDBLite consensus disorder prediction 1 54 - -
Lan8g1288 353 MobiDBLite consensus disorder prediction 226 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1288 Lan-Chr8 19380127 19385406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1288 23 227 AP2-EREBP Transcription Factor Family AT5G57390 62.621 3.13e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lan8g1288 AP2 6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0735 7 6278274 6282581 Lan8g1288 8 19380127 19385406 LSH
Lan8g1288 8 19380127 19385406 Lan13g0671 13 5742170 5746812 LSH