Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1268 ATGGAGTCACCGTTCAATGTTCATATTTTACCGGCTAAACGCCCCGCTTCAACTGGGTTCTCTTCTGATGGGCAAAAAAAGCTAAACTTATCGAGCAATAGTCCGCCATCATCAGAACATGAAAGGACTGAGCATAAGACACCCGGGAAATTGTCAAATGTTGTGGATTACAGCAATCCGTTCGCAGTATCTGACTTCCTTAATTGTTTTGACAGTGGGAAATTTGGAAGTGTAACAAAGGATATAGAGGCCCTTTTAGCTCGAAAAATGCAAATACTGGGGACTTACTTTGCTAAATATCCTACGCTTCTTGATCACTTATTGAAAGAGGCAGTGAAGCATGATGAAGAAACTCATACGCCGAAAAGTCAACAAGTTGCTGTTCTGGCACAGAAAAATGTCAATGATTTGGAGGGTAAGCACATTGAAAAGAATGTCCCTTCAGCACCATTGTCTGTTGTGATTATTGATTCAGATGAGGAGGATGATAGAGATCAAATTTCATCCCTTCCATTTCATAAAGTTGTGTTGCCGAAACAAGCTTCTCCTGCAGTGAGAATGACTGAGTCTCATCCTCCCACTCGATACAGTGAAGGAAATGAAGCTGTAAGATTTGAGACTAGTTTAGCTGATAAAGGTGACAGAGGAAGAGATAAAGGTGACAGAGGAAGAGATAAAGGTAAACATCTTGCTGATAAAGGTGACATCGGCAAAGATAAAGGTGACATCAGCAGAGATAAAGGTGTTTATGTTGGTGTTGAGGAGGAAGAAGATGACCAGGTTGATACAAAAGATGAAGAACTAGATGATATATGGAGGGAAATGTCAATGGCAATAGAATGCTCCAAAGATGTTTCTGTGAACCCTCAGCCTGATGAAGAACCCGAAAAGGATGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTACGTTTGTCGCGTTTGTGGGGTTATCGACAGAGGAATCGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGTACTAGAACTTATGTATCTGATTCATGGAATACCAAAGAAAAAGATGCATTTGGAATTAAGGTTGCTGAGGATGATCTCTTGGTAACTGATATCTCTGCACACCCTAGGCATATGAAACAAATGAAGTCTCATCAAGTCGAAGGATTCAATTTTCTTGTTAGAAACCTTGCGGGTGACCACCCTGGGGGCTGTATCTTGGCACATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAGAGTTTTCTTGGCAAATATCCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGGATACTAACGACTTGGAAGAAGGAGTTCCAGACATGGCAAGTGGAGGACATACCGCTCTATGACTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTTGAAGTGTTGAAACAGTGGGTGGAACATAAAAGCATCCTTTTCTTAGGATATAAACAGTTCTCTTCGATCATATGTGAGAATGGAAATAACAGCTCATCAACAGCTTGCCAAGAGATATTGCTTAAGGTTCCTTCAATTCTCATTTTAGATGAGGGACACAATCCAAGGAATGATAATACTGATATGGTACATTCCCTTGCCAAAGTACAAACTCCTAGAAAAGTTGTATTGTCAGGAACCTTGTATCAGAATCATGTCAAGGAGGTTTTTAACATATTAAATCTTGTGAGGCCGAAGTTTTTGAAGATGGAAACATCGAGGCTTATTGTCAAACGCATTTTCAGTAGAGTACATATACCTTCTGGTAAAAGAGGTTTCTTTGATTTGGTCGAAGACACATTGCAAAAGGACCCAGATTTTAGACGGAAAATAGCTGTCATACAAGATTTACGTGAGATGACTAGCCAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTTGTTGAATTTACTGTGGTGCTCAATCTTACCCCTAGACAGAAGCTTGAAACTGAGAAATTAAAGAAGTTATCCAGGAAGTTTAAGATTAGTTCTGTGGGCAGTGCTGTGTATCTTCATCCTAAATTGAAGCCCCTAGCTGAAAAATGTAGTGAAAATAGCAAAATTGATAATACAAAGGAACTGGATGATACGATAGAGAAACTGGATGTGAAAGATGGCGTGAAATCAAAATTCTTTCGCAACATGTTGAACCTATGTGAATCGGCTGGGGAGAAGCTGCTGGTTTTTAGCCAATATCTCTTACCTTTGAAATATTTAGAAAGGTCAACTATGAAATGGAAGGGTTGGAGTGTCGGGAAAGAAATCTTTGTCATCTCAGGAGAATCAAGCACTGAAGAAAGAGAGCTGTCCATGGAAAAATTTAACAATTCACCTGATGCCAAAATCTTCTTTGGCTCAATCAAAGCATGTGGAGAAGGCATATCACTGGTTGGGGCATCCCGTATCATTATTGTGGATGTTCATCTCAACCCATCAGTTACTCGCCAAGCTATCGGCCGTGCATTTCGACCTGGCCAGAAAAAGAAAGTTTTTGTATATCGTTTGATAGCTGCTGATTCTCCAGAAGAAGATGATCACAGTACTTGTTTTAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGACGTTGAGACAGTTCCTGTGAAAGAATGTGGAGATCTTTTTCTTGAAAGTCCGATTTTAGGTGAAGATGTTAAAGCTTTGTATAAAAGGTAG 2742 0.3982 MESPFNVHILPAKRPASTGFSSDGQKKLNLSSNSPPSSEHERTEHKTPGKLSNVVDYSNPFAVSDFLNCFDSGKFGSVTKDIEALLARKMQILGTYFAKYPTLLDHLLKEAVKHDEETHTPKSQQVAVLAQKNVNDLEGKHIEKNVPSAPLSVVIIDSDEEDDRDQISSLPFHKVVLPKQASPAVRMTESHPPTRYSEGNEAVRFETSLADKGDRGRDKGDRGRDKGKHLADKGDIGKDKGDISRDKGVYVGVEEEEDDQVDTKDEELDDIWREMSMAIECSKDVSVNPQPDEEPEKDEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYVSDSWNTKEKDAFGIKVAEDDLLVTDISAHPRHMKQMKSHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILTTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVEHKSILFLGYKQFSSIICENGNNSSSTACQEILLKVPSILILDEGHNPRNDNTDMVHSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRLIVKRIFSRVHIPSGKRGFFDLVEDTLQKDPDFRRKIAVIQDLREMTSQVLHYYKGDFLDELPGLVEFTVVLNLTPRQKLETEKLKKLSRKFKISSVGSAVYLHPKLKPLAEKCSENSKIDNTKELDDTIEKLDVKDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERSTMKWKGWSVGKEIFVISGESSTEERELSMEKFNNSPDAKIFFGSIKACGEGISLVGASRIIIVDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEDDHSTCFKKELISKMWFEWNEYCGDRAFDVETVPVKECGDLFLESPILGEDVKALYKR* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1268 913 Gene3D - 643 892 IPR027417 -
Lan8g1268 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 875 IPR027417 -
Lan8g1268 913 CDD SF2_C_SNF 711 848 - -
Lan8g1268 913 PANTHER PROTEIN CHROMATIN REMODELING 35 18 913 - -
Lan8g1268 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 574 IPR027417 -
Lan8g1268 913 MobiDBLite consensus disorder prediction 183 241 - -
Lan8g1268 913 MobiDBLite consensus disorder prediction 1 51 - -
Lan8g1268 913 SMART helicmild6 752 837 IPR001650 -
Lan8g1268 913 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Lan8g1268 913 Pfam SNF2-related domain 398 614 IPR000330 GO:0005524|GO:0140658
Lan8g1268 913 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 913 IPR044567 GO:0080188
Lan8g1268 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 705 886 IPR001650 -
Lan8g1268 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 393 572 IPR014001 -
Lan8g1268 913 Gene3D - 346 589 IPR038718 -
Lan8g1268 913 MobiDBLite consensus disorder prediction 18 37 - -
Lan8g1268 913 SMART ultradead3 375 584 IPR014001 -
Lan8g1268 913 MobiDBLite consensus disorder prediction 205 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1268 Lan-Chr8 19155715 19162683 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan8g1268 SNF2_N 1.7e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0775 7 6819094 6825347 Lan8g1268 8 19155715 19162683 LSH