Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan8g1267 | ATGGGAAAGAATAATAATAAAACGAAGGAAAATGGGAAAGAACACTCCAACTTAACCATTTTCGTCTCTAACTTGCCTTACTCCTTTTCCAACACTCAGCTTGAGGAAACGTTTAGTGAAGTTGGACCTGTCAGGCGTTGCTTCATGGTTACACAAAAGGGGTCTGCTCAGCATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGGAAGATGCTATCCGTGCTATTGAGCTGAAGAATGGTTCACCGGTTGGGGGTCGGAAAATTGCAGTGAAGCATGCAATGCCTCGTCCTACTCGTGAGGAACGACAATCAAAACCAAATCAAGCGGGTAAAACAGATGACCACACAGAGTCAAAAAGTAATGATAAAGACGGCACATCTTCTGAAGCAGATAAACCTGTTTCAGTTTCGAAGGAAGAAGTACAAGTTTCAAATAAGCAAAGAATCTCAAAGAAGCCCATGGAAGTAAGAAAAGCAGATCTCTGCAATGATATACCGGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCAAGAATTCTGATATGGCTGAAGATGTTCACCGCCAAGCCAAAGAGATTGGCACTGTATGTTCTATTAAGTATCCCCTTCCAAGGAAAGATCTTGTACATGGTCTCCTGCAAGATGGCTGTGTTTTGGAGGCTTCTGCTGTACTTTATACTAGTGTAAAATTAGCCCGAGCAGCTGTTGCATCATTACATAAAAAGGAGATAGGTGGGGGAACTGTTTGGGCAAGACAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAGTGAAGATGAAATAAGAAATATATTTGCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACGCAAATCAGATACTGGTCTGTCTAAGGGCTTTGCATTTGTAAAATTCACGTGCAAGCAAGATGCGGAAAATGCCATTCAAAAGCGAAACGGGTTTACTTTTTCAAAACGGCTCATAGCAGTTGACTGGGCTGTTCCAAAAAAGATATTTAACAGTGATGCAAATGCTGCTCTTGCTTCAGAAGAAGGACAAGAAAATGTGAACGATGAAGATGGTAGTGCTACTGAGAGTGATGGAGATGACAGTGATATAGATTCTTCAAGTGCCATGGAAGAGGATGGTGCTCCTTCTGAAATTAATTTTGAAAAGGAAGCAGACATTTCAAGGAAGATTCTTAACAACTTGATTACATCCTCCACCAAGGGAACATCAGTAAATAATGATTCTGTGTTGAGAGGAAACGAGGAGCCAAAATCCAATGAAATTGTTAAGGATGCAGATAATAAAGCATCTGATGAGACTGAAAAGGTTTCAGATGTTTCTAAGCCTGAAATCTCCGACAAAAGCAAGTTATCAAATCCCAAGCAAGCAGAAGAAGCTGATTTGCAGAGAACAGTTTTCATAAATAATCTTCCTTTTGAATGTGACAATGAAGAAGTGAAGCAACGATTTTCTGGATTTGGGGAAGTGGAATACTTTGCTCCGGTTCTCCACCAAGTGACCAAGCGACCAAGAGGAACTGGTTTTCTCAAGTTTAAAACCGTAGAAGCAGCTGATGCTGCAATTTCTGCAGCCAGTGCTGCTTCCAGCGTGGGCATTCTACTGAAAGGTAGACCATTAAAAGTTTTGAAGGCTTTGGATAAAAAATCGGCTCAAGACAAGGAAGTGGAGAAAGCTAAAAATGAGGTTCAAGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTCATTCTTGAGGGAACACCAGCTGCTGAAGGGGTTTCATCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAGAAGAAAACAAAGCTTCAATCACCAAATTTCCATGTTTCAACTACTCGGCTTATCATCTACAACTTGCCCAAGACGATGACTGAAAAACAACTGAAGAAGCTTTGCATTGATGCAGTCAAATCTAAAGCTACCAAGCAAAAACCTTTGATTCGCCAGATTAAGTTCTTGAAAGATGGAAGGAAAGGAAATGCTGTTCCAGAACGCTACTCACGTGGAGTTGCCTTCGTTGAATTTTCAGAGCACCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTCAGCCCGGAACATCGGCCAATTGTGGAGTTCGCTCTTGATAATGTTCAAACATTGAAACTCCGAAAGGAAAAGCTTCAATATCAGCAGCAAGCTCCTCATGCTGACAACGATGGCAAGGAAGATGGTGAACTGGGCAAAGAACTAGGTCACGTGCATACCAAGGACAGAAAACGAAAATCTCAAGAGCATGGCAAATCAGCAGCGAAGGAGTCGGCAGTCAATACAAACAGTGAACCAGGTGGTACAGTGGCAAGTGAAAAATCCCCTGAAGGACACAAATTCAAAAGGCAGAAAGACAACCGTAAGAATAGAAGTGCTGAAGAGTCTTCACTAAAACAAAACTCAGATGCCTTGTCCAGGAAGCCGAGGAATGAAAAAGGTGACCGGAATCATGGTAATACATCACATGAAGCTCAAAACACTACCATTGACACCAATAGAATAAAGGCAGGAAACAAAGTTGATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGAGCCGGTGCAAGATGTTTCCAGAAAACGGTCTAAAAAGAAGAAAGCTCCAGTAGGGAAAGAAGCAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACATAAAGGTTCTCAGGGGAATGATGGTGACAAAAAACCTTCCAAGCAGCTTAGGAAATGGTTTGAATCATAG | 2862 | 0.4186 | MGKNNNKTKENGKEHSNLTIFVSNLPYSFSNTQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDAIRAIELKNGSPVGGRKIAVKHAMPRPTREERQSKPNQAGKTDDHTESKSNDKDGTSSEADKPVSVSKEEVQVSNKQRISKKPMEVRKADLCNDIPDEGGCSEKQRVARTVIFGGLKNSDMAEDVHRQAKEIGTVCSIKYPLPRKDLVHGLLQDGCVLEASAVLYTSVKLARAAVASLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKASEDEIRNIFASAGYVWDVFIPRKSDTGLSKGFAFVKFTCKQDAENAIQKRNGFTFSKRLIAVDWAVPKKIFNSDANAALASEEGQENVNDEDGSATESDGDDSDIDSSSAMEEDGAPSEINFEKEADISRKILNNLITSSTKGTSVNNDSVLRGNEEPKSNEIVKDADNKASDETEKVSDVSKPEISDKSKLSNPKQAEEADLQRTVFINNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAADAAISAASAASSVGILLKGRPLKVLKALDKKSAQDKEVEKAKNEVQDHRNLYLAKEGLILEGTPAAEGVSSSDMLKRQELERKKKTKLQSPNFHVSTTRLIIYNLPKTMTEKQLKKLCIDAVKSKATKQKPLIRQIKFLKDGRKGNAVPERYSRGVAFVEFSEHQHALVALRVLNNNPETFSPEHRPIVEFALDNVQTLKLRKEKLQYQQQAPHADNDGKEDGELGKELGHVHTKDRKRKSQEHGKSAAKESAVNTNSEPGGTVASEKSPEGHKFKRQKDNRKNRSAEESSLKQNSDALSRKPRNEKGDRNHGNTSHEAQNTTIDTNRIKAGNKVDVGFRKRKMQNQEEPVQDVSRKRSKKKKAPVGKEAVDKLDMLIEQYRSKFSHKGSQGNDGDKKPSKQLRKWFES* | 954 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 792 | 808 | - | - | |
| Lan8g1267 | 953 | Gene3D | - | 629 | 735 | IPR012677 | - | |
| Lan8g1267 | 953 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 276 | 345 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 89 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 492 | 550 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 909 | 926 | - | - | |
| Lan8g1267 | 953 | Gene3D | - | 2 | 132 | IPR012677 | - | |
| Lan8g1267 | 953 | Gene3D | - | 262 | 390 | IPR012677 | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 370 | 394 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 365 | 408 | - | - | |
| Lan8g1267 | 953 | Coils | Coil | 568 | 595 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 933 | 953 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 859 | 873 | - | - | |
| Lan8g1267 | 953 | SUPERFAMILY | RNA-binding domain, RBD | 270 | 354 | IPR035979 | GO:0003676 | |
| Lan8g1267 | 953 | SMART | rrm1_1 | 491 | 569 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | SMART | rrm1_1 | 643 | 734 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | SMART | rrm1_1 | 275 | 348 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | SMART | rrm1_1 | 19 | 92 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 440 | 483 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 813 | 834 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 759 | 791 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 843 | 858 | - | - | |
| Lan8g1267 | 953 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 96 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | PANTHER | RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED | 490 | 754 | - | - | |
| Lan8g1267 | 953 | PANTHER | RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED | 9 | 423 | - | - | |
| Lan8g1267 | 953 | SUPERFAMILY | RNA-binding domain, RBD | 17 | 260 | IPR035979 | GO:0003676 | |
| Lan8g1267 | 953 | CDD | RRM4_RBM28_like | 642 | 739 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 878 | 900 | - | - | |
| Lan8g1267 | 953 | Coils | Coil | 733 | 753 | - | - | |
| Lan8g1267 | 953 | PANTHER | RNA BINDING PROTEIN | 9 | 423 | - | - | |
| Lan8g1267 | 953 | PANTHER | RNA BINDING PROTEIN | 490 | 754 | - | - | |
| Lan8g1267 | 953 | CDD | RRM2_RBM28_like | 275 | 351 | - | - | |
| Lan8g1267 | 953 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 490 | 573 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 428 | 485 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 83 | 153 | - | - | |
| Lan8g1267 | 953 | Gene3D | - | 429 | 587 | IPR012677 | - | |
| Lan8g1267 | 953 | CDD | RRM3_RBM28_like | 490 | 571 | - | - | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 94 | 137 | - | - | |
| Lan8g1267 | 953 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 274 | 352 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | MobiDBLite | consensus disorder prediction | 750 | 953 | - | - | |
| Lan8g1267 | 953 | CDD | RRM1_RBM28_like | 19 | 97 | - | - | |
| Lan8g1267 | 953 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 642 | 755 | IPR000504 | GO:0003723 | |
| Lan8g1267 | 953 | SUPERFAMILY | RNA-binding domain, RBD | 490 | 720 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan8g1267 | Lan-Chr8 | 19107067 | 19115688 | Wgd |