Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0905 ATGGGGAAGAATAATAAAATGAAGGAAAATGGGAAAGAACACGGCAACTTAACTGTTTTTGTCTCCAACTTGCCTTACTCCTTTTCCAACACTCAGCTGGAAGAGAGTTTCAGTGAGGTTGGACCTGTTAGACGTTGCTTCATGGTCACACAGAAGGGGTCAGCTCAGCATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGGAAGATGCTAACCGTGCTATTGAGCTAAAGAACGGTTCATCTGTTGGGGGTCGGAAAATTGCAGTGAAGCATGCAATGCCTCGTCCTACCCGTGAGGAACGACAATCAAAACCAAATCAAGTGAGTAAGACAGATGACCACACCGAGTTGAAAAATGATGATAAAGATGGCAGATCTTCTGAAGCAGATAAGCCTGTTTCAGTTTTGAAGGAAGATGTACAAGTTTCAAGTAAACAAAAAAATTCAAGGAAGCCCACGGAAATGAGAAAAGCAGATCTTTGCAATGATATACCAGATGAGGGGGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGCCTCAAGAATTCTGATATGGCTGAAGATGTCCACCACCAAGCCAAAGAGATTGGCACTGTATGTTCTATTAAGTATCCACTTCCAAGGAAAGATCTTGCACATGGTCTCCTGCAAGATGGCTGTGTTTTGGAGGCTTCTGCTGTACTTTATACAAGTGTAAAATTAGCCCGAGCTGCTGTTGCATCATTGCATAAAAAGGAGATAGGTGGGGGCACTGTTTGGGCACGGCAACTGGGTGGAGAGGGATCCAAGACTCAGAAGTGGAAGCTTATTGTCAGAAATCTTCCTTTCAAGGCCAGAGAAGATGAAATAAGAAATATATTTGCATCTGCAGGGTATGTGTGGGATGTATTTATCCCACAAAAATCAGACACAGGTCTCTCCAAGGGTTTTGCATTTGTAAAATTCACGTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGCTCAATGGATCTACATTCTCAAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAATAGTGATGCAAATGCTGCTCTTGCTTCAGAAGAAGGGCAACAAGAGATGAAAGATGAAGATGGTAGTGCTACTGAGAGTGATGGAGATGACAGTGATATAGATTCCACTAGTGCTGTGGAAGAGGATGGTGTTCCTTCTGAAATTGATTTTGATAAGGAAGCAGACATTGCAAGGAAGGTTCTTAGCAACTTGATTACGTCCTCCACCAAAGGAACATCTGTAGATAATGATTCTGTGTTGAGAGAAAACGAGGAGCGAAAGTCCAATGAAATTGTTAAGGATGCAGATAATAAAGCATCTAATGAGTCTGAAAAGGTTGCAGATGTTTCTAAGCCTGAAATCTCCATCAAAAGCAAGTTACCAAATCCCAAGCAAACAGATGAAGCTGATTTGCAGAGAACAGTTTTCATAAATAATCTTCCTTTTGATTGTGACAATGAAGAAGTGAAGCAACGTTTTTCTGGATTTGGGGAAGTGGAATACTTTGCTTCGGTTCTCCACCAAGTGACCAAGAGACCAAGAGGAACTGGTTTTCTTAAGTTTAAAACCGTAGAAGCAGCTGATGCTGCAATTTCAGCAGCCAGTACTGCTTCTGGAACGGGTATTCTACTGAAAGGCAGGCCATTAAAAGTTTTGAAGGCTTTGGATAAAAAATCAGCTCAGGACAAGGAAGTGGAGAAAGCTAAAAATGAGATTCAAGATCACCGCAATCTTTACTTGGCAAAGGAGGGACTCATTCTTGAGGGAACACCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAAACAAAGCTTCAATCACCAAATTTCCATGTTTCAACAACTAGGCTTATTATCTACAACTTGCCAAAGTCAATGTCTGAAAAAGAACTGAAGAAGCTTTGCATTGATGCAGTCAAATCTAAAGCTACCAAACAAAAACCTATGGTTCGGCAGATAAAGTTCTTGAAAGATGGAAGGAAAGGAAATGCTGTTCCAGAACGCTATTCACGTGGAGTTGCCTTCGTTGAATTTTCAGAGCATCAGCATGCTCTTGTGGCTCTGAGAGTACTTAACAACAATCCTGAAACTTTCAACTCTGAACATCGGCCGATAGTGGAGTTTGCTCTTGATAATGCTCAAACGTTAAAACTTCGTAAGGAAAAGCTACAATATCAGCAGCAAGCCCCTCGTGATGACAACAATAGCAAGGAAAATGGTGAACCCGGCAAAGAACAAGGTCACACACATACCAAGGACAGAAAACGAAAATCTCAAGAGGATGGCAAACCAGTAGCTAAGGAGTCGGGAACGAATACAAACAGTGAATCAAGTGGAAAATCCACAGAAGGACACAAATTCAAAAGACAAAAAGGCAACAACAAGAATAAAAGCGCTGAAGACTCTCCACTAAAACAAAATTCAGATGCTTTGTCCAGAAAGCCAAAGACTGTAAAAGGCACCGAGAATCGTGGTAATAGATCACATGAAGCTGAAAACACTGCTACCATTGATACCAATAGAGTGAAGACAAGAAACAAAGATGATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGAGCCAGGGCAAGATGCTTCTAGGAAACGTTCTAAAAAGAAGAAAGCTCCAGTAGGGAAAGAAGCAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACATAAAGGTTCTCAAGGGAATGATGGTGATAAAAAACCTTCCAAGCAGCTTAGGAAATGGTTTGAGTCATAG 2847 0.4106 MGKNNKMKENGKEHGNLTVFVSNLPYSFSNTQLEESFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPTREERQSKPNQVSKTDDHTELKNDDKDGRSSEADKPVSVLKEDVQVSSKQKNSRKPTEMRKADLCNDIPDEGGCSEKQRVARTVIFGGLKNSDMAEDVHHQAKEIGTVCSIKYPLPRKDLAHGLLQDGCVLEASAVLYTSVKLARAAVASLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAREDEIRNIFASAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSTFSKRLIAVDWAVPKKIFNSDANAALASEEGQQEMKDEDGSATESDGDDSDIDSTSAVEEDGVPSEIDFDKEADIARKVLSNLITSSTKGTSVDNDSVLRENEERKSNEIVKDADNKASNESEKVADVSKPEISIKSKLPNPKQTDEADLQRTVFINNLPFDCDNEEVKQRFSGFGEVEYFASVLHQVTKRPRGTGFLKFKTVEAADAAISAASTASGTGILLKGRPLKVLKALDKKSAQDKEVEKAKNEIQDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKKTKLQSPNFHVSTTRLIIYNLPKSMSEKELKKLCIDAVKSKATKQKPMVRQIKFLKDGRKGNAVPERYSRGVAFVEFSEHQHALVALRVLNNNPETFNSEHRPIVEFALDNAQTLKLRKEKLQYQQQAPRDDNNSKENGEPGKEQGHTHTKDRKRKSQEDGKPVAKESGTNTNSESSGKSTEGHKFKRQKGNNKNKSAEDSPLKQNSDALSRKPKTVKGTENRGNRSHEAENTATIDTNRVKTRNKDDVGFRKRKMQNQEEPGQDASRKRSKKKKAPVGKEAVDKLDMLIEQYRSKFSHKGSQGNDGDKKPSKQLRKWFES* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0905 948 MobiDBLite consensus disorder prediction 749 948 - -
Lan7g0905 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 572 IPR000504 GO:0003723
Lan7g0905 948 SUPERFAMILY RNA-binding domain, RBD 489 719 IPR035979 GO:0003676
Lan7g0905 948 MobiDBLite consensus disorder prediction 433 468 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 928 948 - -
Lan7g0905 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 641 754 IPR000504 GO:0003723
Lan7g0905 948 MobiDBLite consensus disorder prediction 841 895 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 825 840 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 378 393 - -
Lan7g0905 948 CDD RRM1_RBM28_like 18 96 - -
Lan7g0905 948 Gene3D - 640 735 IPR012677 -
Lan7g0905 948 Gene3D - 260 389 IPR012677 -
Lan7g0905 948 CDD RRM3_RBM28_like 489 570 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 93 136 - -
Lan7g0905 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Lan7g0905 948 MobiDBLite consensus disorder prediction 760 790 - -
Lan7g0905 948 SUPERFAMILY RNA-binding domain, RBD 269 353 IPR035979 GO:0003676
Lan7g0905 948 MobiDBLite consensus disorder prediction 807 824 - -
Lan7g0905 948 CDD RRM2_RBM28_like 274 350 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 364 406 - -
Lan7g0905 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 344 IPR000504 GO:0003723
Lan7g0905 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 550 IPR000504 GO:0003723
Lan7g0905 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Lan7g0905 948 SUPERFAMILY RNA-binding domain, RBD 16 259 IPR035979 GO:0003676
Lan7g0905 948 Coils Coil 567 594 - -
Lan7g0905 948 Gene3D - 2 108 IPR012677 -
Lan7g0905 948 Gene3D - 422 586 IPR012677 -
Lan7g0905 948 MobiDBLite consensus disorder prediction 425 483 - -
Lan7g0905 948 SMART rrm1_1 642 733 IPR000504 GO:0003723
Lan7g0905 948 SMART rrm1_1 274 347 IPR000504 GO:0003723
Lan7g0905 948 SMART rrm1_1 490 568 IPR000504 GO:0003723
Lan7g0905 948 SMART rrm1_1 18 91 IPR000504 GO:0003723
Lan7g0905 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 351 IPR000504 GO:0003723
Lan7g0905 948 MobiDBLite consensus disorder prediction 904 921 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 144 169 - -
Lan7g0905 948 CDD RRM4_RBM28_like 641 738 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 791 806 - -
Lan7g0905 948 PANTHER RNA BINDING PROTEIN 8 375 - -
Lan7g0905 948 PANTHER RNA BINDING PROTEIN 489 753 - -
Lan7g0905 948 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 489 753 - -
Lan7g0905 948 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 8 375 - -
Lan7g0905 948 MobiDBLite consensus disorder prediction 86 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0905 Lan-Chr7 8304915 8313701 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0905 7 8304915 8313701 Lan8g1321 8 20054774 20056050 LSH