Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0028 ATGTCTCCACTTGTCTTACTTTTCATCATTCTAGCTTCCTTAAGTTCATGTTTTGGCTATCACATAGAGGAACCACTTTATCAAACAAATGCTTATGAACGCTACCCTATGCATAATTATTGGAGGTTCAACAATGCAAAACATGAACGTTTTGGTTTTATGACAAGAGCTAATAGAGCTACCCCTCATTCTTCAATTAGTGTTGATGACTTTGGAGCCAAAGCAGATGGAAGAGATGATACTGAAGCATTTCAGAAGGCATGGAATGAAGCTTGTTCTAGAGGAGCTTCCCTTGTGGTCCCTGAAAATAGGATCTATCTTCTTAAGCCAATAACATTTTCAGGTCCATGTCAACCCAACACTGCCTTTATGATCTACGGAACAATCAAGGCATGGCCTGTAATGTCAGCATATGAGCCAGATAGACTACACTGGATTGTGTTTGATAGTGTCTCCAATTTCAAAGTTGATGGTGGTGGCACTTTCAATGGCAATGGGAAAATATGGTGGCAAAACTCATGCAAAACCAACACAAACCTTCCATGCAAAGATGGACCAACTGCCGTGACTTTTAATGAATGCAACAATTTGAGAGTGGCAAACTTAAGGTTCAAAGATGCACAACAAATGCATGTAACCTTTCAGAGATGCTTCAATGTTATTGTCTCGAATCTCGTCGTTAAAGCACCAGGCAACAGCCCTAACACTGATGGAATTCATGTCTCAGAAACACACAATATTCAAATAAGCAACAGTGAGATTGGGACAGGTGATGACTGTATTTCAATAGTGAGTGGATCCCAGAATGTTAGAGTTACAGATATTACCTGTGGACCAGGACATGGAATCAGCATTGGTAGCCTAGGAGCTGATAACTCAGAAGCTGAAGTCTCGAATGTGGTAGTGAATAGAGCCACCTTAAGAGGAACAAGTAATGGAGTTAGAATAAAGACATGGCAGGGAGGTCATGGTTATGCAAGAAACATCAAATTCTTGAATATAGTAATGCAAAACGTGACAAATCCTATAATCATAGATCAATATTACTGTGATCAACAAGTGCCATGCCAAGAGCAGGTGTCAGGGGTGCAATTAAGCAAAGTGTTGTACCAAAATATAAGAGGAACTAGTGCCTCAGAAGTGGCTATCAAATTTGAGTGCAGCAAAAGCGTCCCTTGCAGAGAAATCTATGTGGAAGATGTAATTTTAGAACCAGAAGGTGGTAGTGGAGGCACCATTGCTACATGTGAAAATGTTAGATATGTTAACAGAGGAAAGTTTTTTCCTCAATGCTCTCCTTCAATCAAATAA 1311 0.3989 MSPLVLLFIILASLSSCFGYHIEEPLYQTNAYERYPMHNYWRFNNAKHERFGFMTRANRATPHSSISVDDFGAKADGRDDTEAFQKAWNEACSRGASLVVPENRIYLLKPITFSGPCQPNTAFMIYGTIKAWPVMSAYEPDRLHWIVFDSVSNFKVDGGGTFNGNGKIWWQNSCKTNTNLPCKDGPTAVTFNECNNLRVANLRFKDAQQMHVTFQRCFNVIVSNLVVKAPGNSPNTDGIHVSETHNIQISNSEIGTGDDCISIVSGSQNVRVTDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLRGTSNGVRIKTWQGGHGYARNIKFLNIVMQNVTNPIIIDQYYCDQQVPCQEQVSGVQLSKVLYQNIRGTSASEVAIKFECSKSVPCREIYVEDVILEPEGGSGGTIATCENVRYVNRGKFFPQCSPSIK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0028 436 ProSitePatterns Polygalacturonase active site. 274 287 IPR000743 GO:0004650|GO:0005975
Lan7g0028 436 Pfam Glycosyl hydrolases family 28 97 420 IPR000743 GO:0004650|GO:0005975
Lan7g0028 436 Gene3D - 48 430 IPR012334 -
Lan7g0028 436 PANTHER - 4 432 - -
Lan7g0028 436 SMART pbh1 267 287 IPR006626 -
Lan7g0028 436 SMART pbh1 297 318 IPR006626 -
Lan7g0028 436 SMART pbh1 326 347 IPR006626 -
Lan7g0028 436 SMART pbh1 244 265 IPR006626 -
Lan7g0028 436 SMART pbh1 217 243 IPR006626 -
Lan7g0028 436 PANTHER POLYGALACTURONASE 4 432 - -
Lan7g0028 436 SUPERFAMILY Pectin lyase-like 60 432 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0028 Lan-Chr7 150896 153473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0028 4 432 Glycoside Hydrolase AT3G07970 54.897 2.53e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0028 K01184 - gmx:732596 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0028 7 150896 153473 Lan4g1252 4 20844166 20848541 PCT