Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1972 ATGGTTTTCTCTTCCATTCCACTCTATTTAGATCCCTCCAATTGGCACCAGCAATCAAATCAATATCATCAAGCAAATGTTACTTCCAATAATCATGAGTTGCTTCCACCATTACCACCACAGCCAAAAGGTTCTGGCTATGGTGGAGAGTCAATTCGGCCTGGTCCGATAGCGGATCAAGGAAATCAGTTAACTAAGATGGCACTACCGGATCAGGTCACTCAAAAGTGTCCACGATGTGAATCCACGAATACAAAATTTTGCTACTACAACAATTACAACCTCTCCCAACCCAGACACTTTTGCAAGACATGTAGGCGGTATTGGACAAAAGGTGGTGCTCTTAGAAACGTTCCTGTTGGTGGAGGATGTAGAAGAAACAAGAAGAACAAAAGGAGTAGTAGCTCCAAATCTCCATCATCCATTGATAAAAACTCATCAATCTCAAACTCCACAAGTGCAACAAACCCTTTAGGCATAAGCACCCCTAACCTAATTGGTCGTTTCCCTCAGCAACAAAGTAACCATCAACCTTTCATGGCTTCTCTTCAGAATCTGAACCGTTATAGTGTGGGAAACATGAGCAACACCAATCAAATGGAGTTTCAAATTGGTGGTCGTGGTTTAACTTCAGTAGGAGGAGGAGGAGGAGTGTTTCAACACTTTCCTTTTTTGAATGGTTTTGAGTCAACTTCAGCTGCTTCATACCCTTTTCAGAGTGAGAATGTTGAAGCACCATATGGTTTGGTTAAATTTGAAGATCTAAATCCTTCAAGAAACCCTTTGAGCGGTGTGTCAGAAAATAATAACCAATATTATTCATGGACTGATTTATCAGGTCTTGCCCCTTCTTCCACAACTCATCTTTTGTAA 873 0.4112 MVFSSIPLYLDPSNWHQQSNQYHQANVTSNNHELLPPLPPQPKGSGYGGESIRPGPIADQGNQLTKMALPDQVTQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRRNKKNKRSSSSKSPSSIDKNSSISNSTSATNPLGISTPNLIGRFPQQQSNHQPFMASLQNLNRYSVGNMSNTNQMEFQIGGRGLTSVGGGGGVFQHFPFLNGFESTSAASYPFQSENVEAPYGLVKFEDLNPSRNPLSGVSENNNQYYSWTDLSGLAPSSTTHLL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1972 290 MobiDBLite consensus disorder prediction 119 171 - -
Lan6g1972 290 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Lan6g1972 290 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Lan6g1972 290 MobiDBLite consensus disorder prediction 134 171 - -
Lan6g1972 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 286 IPR045174 GO:0003700|GO:0006355
Lan6g1972 290 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 286 - -
Lan6g1972 290 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1972 Lan-Chr6 30638870 30640530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1972 1 131 C2C2-Dof Transcription Factor Family AT2G37590 55.102 8.75e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan6g1972 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1972 - - gmx:100787775 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1972 6 30638870 30640530 Lan7g0244 7 1529068 1530781 PCT
Lan6g1972 6 30638870 30640530 Lan8g1717 8 23991919 23993653 PCT
Lan7g0244 7 1529068 1530781 Lan6g1972 6 30638870 30640530 PCT
Lan8g1717 8 23991919 23993653 Lan6g1972 6 30638870 30640530 PCT