Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1078 ATGAGAAACTACTTGCACTTTCTTTCACCTATGCTATTGTCTTTCCTATTTTTCAGTGTTCTATGTCTAGTTCAAACCAAATCCATTATTGAACCATGTACCTCTTCATTCTCATGCCCCTCCCTTCTCTCATACCTTTTACCTTGGGACTCAAAGCTCTCAGAAATTGCAACTCGTTTCAATGTAAATGTTTCTGATATCTTAGCTGCAAACTATGTCTACCCCATAACAACAACAACATCATATGCTAATGAAATCCTAAGAGCCAAATCAATAGTGAAAATTCCAATTGCATGCCCTTGTGTTGATGGCATAAGAAGGTCAATGTCAACAATTTACACTGTTCAACCATCTGATACACTTGCAACTATATCAGATGGTTTTGGTGGATTAGTTAGTGGTGAACAAATTAAGAATGTGAATAGTATAAACCCTACAAACCCTTTGGTTAATGGAGGCAAAATTGTTATACCATTGCCATGTTCATGTTTAAACAATGTGAACAATGGTGGAAATGTGGTTTATATGTCTTATGTGGTGCAGAAAGGAGAGAGCCTAGGAAGCATAGCAATGGTTTATGGTACAACTGTTTCAGACATGAAAACTGTGAATGGGATTGCTGAAGCTGCAGTTGACCCTGGAGACATTCTTTCTGTCCCTATTTCAGCATGTTCATCAGCACCACTGAATTGGTACAATGAGAGTCTTATAGTCCCAAATGGCTCATATGCTCTAACTGCCACCAACTGCATCAAATGCACTTGTGCACCATTGGATCTCAAGATGCAATGTAACCCTTCTGGATTAGATGTGCCCTGCTATAATTTGCATTGCAAAGGATCCAATCTTCTTATTGGGGATGTGCATGTGGAACATTCAAAAACTGGTTGCAATGTGACCCAGTGTGTTTACCGTGGCCATAGGGGTGGCAAAATTCTGAGTAGTATGATGAACTCCTCTTACCTCATGTGCCCGGATAATCAAAGTTATAGTGGAGCAACATGCTGGCCCTCCTACCCATTGGTTTTGTCTCCAAGTCAAACCCCCATGCCAGATTCTGATGCTCCTATGAGAAGTAGCACCTCCAGTAAAAAAAGGCTTGGTCAATTTTCATTTATCAGTGTGCTGCAATTGTTCATGCCAAAACTTATCCTTTATTCGTTCATGTGA 1170 0.4 MRNYLHFLSPMLLSFLFFSVLCLVQTKSIIEPCTSSFSCPSLLSYLLPWDSKLSEIATRFNVNVSDILAANYVYPITTTTSYANEILRAKSIVKIPIACPCVDGIRRSMSTIYTVQPSDTLATISDGFGGLVSGEQIKNVNSINPTNPLVNGGKIVIPLPCSCLNNVNNGGNVVYMSYVVQKGESLGSIAMVYGTTVSDMKTVNGIAEAAVDPGDILSVPISACSSAPLNWYNESLIVPNGSYALTATNCIKCTCAPLDLKMQCNPSGLDVPCYNLHCKGSNLLIGDVHVEHSKTGCNVTQCVYRGHRGGKILSSMMNSSYLMCPDNQSYSGATCWPSYPLVLSPSQTPMPDSDAPMRSSTSSKKRLGQFSFISVLQLFMPKLILYSFM* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1078 389 Gene3D LysM domain 167 227 IPR036779 -
Lan6g1078 389 Gene3D LysM domain 106 166 IPR036779 -
Lan6g1078 389 SMART LysM_2 112 158 IPR018392 -
Lan6g1078 389 SMART LysM_2 177 220 IPR018392 -
Lan6g1078 389 SUPERFAMILY LysM domain 176 220 IPR036779 -
Lan6g1078 389 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 11 340 - -
Lan6g1078 389 ProSiteProfiles LysM domain profile. 176 219 IPR018392 -
Lan6g1078 389 CDD LysM 177 219 IPR018392 -
Lan6g1078 389 ProSiteProfiles LysM domain profile. 111 157 IPR018392 -
Lan6g1078 389 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 340 - -
Lan6g1078 389 CDD LysM 111 157 IPR018392 -
Lan6g1078 389 Pfam LysM domain 53 75 IPR018392 -
Lan6g1078 389 Pfam LysM domain 113 158 IPR018392 -
Lan6g1078 389 Pfam LysM domain 178 220 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1078 Lan-Chr6 10395946 10400188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1078 4 367 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.892 8.32e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1078 - - gmx:100819382 513.072