Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0713 ATGGGTTTGAGTTCTAAGCAAGTTTCTAGCAGTGGACTTGATTGGAACAATGGCTTATTGGAACCTCAAAAGTTAGAGCTTCTTCCAAAGCCTCATCAAATGAAGAAACAACAACAAAGTGAGGAATCATCAGAGACTTTGAAGTGTCCAAGATGTGACTCAACAAATACAAAATTTTGTTACTACAATAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTTAGAAATGTTCCTGTTGGTGGTATCAGGAAGAATAAAAGGGTCAAAAAACCAACCACACCAACAACAACAACAACAACCTCTTCCACCACCACAACCACTAATTCTACTTGTACCACTAATAACATGAACACTATTCAAATTCCTCTTGATCAAAAAAACATGTCTTCTTCTCTCTATCAAGCACTGATTGGTCCACCACCTTTGCTACTACAACAACAGAATCTGATGAACATGAGAGACTTGGAGAGTAAGGACTTTGGTATGACTCTGAGTTCTTCATCTTTGCCTCTGGCTCAAAACCAAAGCCTCCACTTCCCTTTCTCAACCTCAAGCTCTTTTTACACAAACCCTTTAAGATCATCATCCAATGTTTATAACTATGTGGAGGACTCAACTATGAACAGTGCAATACCAAGCACTGGTTCTATTAACACACATGCATGGGAGATAACAGCTACTAGTGGTGGCATGGGAATGTCTAACTATTGGAGCTGGGAGGATATTGATTCATTGGTCTCAACTGATCTAAAGGATCCTTGGGATGATTCTGATATCAAACCTTGA 825 0.4012 MGLSSKQVSSSGLDWNNGLLEPQKLELLPKPHQMKKQQQSEESSETLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGIRKNKRVKKPTTPTTTTTTSSTTTTTNSTCTTNNMNTIQIPLDQKNMSSSLYQALIGPPPLLLQQQNLMNMRDLESKDFGMTLSSSSLPLAQNQSLHFPFSTSSSFYTNPLRSSSNVYNYVEDSTMNSAIPSTGSINTHAWEITATSGGMGMSNYWSWEDIDSLVSTDLKDPWDDSDIKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0713 274 MobiDBLite consensus disorder prediction 1 46 - -
Lan6g0713 274 MobiDBLite consensus disorder prediction 99 122 - -
Lan6g0713 274 PANTHER OS06G0284500 PROTEIN 36 230 - -
Lan6g0713 274 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Lan6g0713 274 MobiDBLite consensus disorder prediction 28 46 - -
Lan6g0713 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 230 IPR045174 GO:0003700|GO:0006355
Lan6g0713 274 MobiDBLite consensus disorder prediction 1 17 - -
Lan6g0713 274 MobiDBLite consensus disorder prediction 104 122 - -
Lan6g0713 274 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Lan6g0713 274 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0713 Lan-Chr6 6326058 6327339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0713 47 104 C2C2-Dof Transcription Factor Family AT1G28310 84.746 8.16e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan6g0713 zf-Dof 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0713 - - gmx:100818111 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0694 17 6121971 6123235 Lan6g0713 6 6326058 6327339 LSH
Lan6g0713 6 6326058 6327339 Lan4g0694 4 9369112 9370959 PCT
Lan6g0713 6 6326058 6327339 Lan16g0124 16 985331 987058 PCT
Lan4g0694 4 9369112 9370959 Lan6g0713 6 6326058 6327339 PCT
Lan16g0124 16 985331 987058 Lan6g0713 6 6326058 6327339 PCT