Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0529 ATGATGATGTCACAAGATGATGAAACACCTCCAAAACCAGCAGCAACACCCAAAGACAACCATGAGAATAATAACCAACAAGGTTCTAATTCTGGTAGCAGGAAAAGTGGCACAGGCACAACAAGGCCACATGAACAAAGCTTGAAGTGTCCACGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCACTTCTGCAAAACCTGTAGAAGATACTGGACAAAAGGTGGCGCTTTGAGAAACGTTCCTATAGGTGGAGGGTGCAGGAAGAACAAGAAGGTTAAGTCTTCAAGGCTCTCATGTGATTCAATAGACTCTGGTGGTGGTACTTCCTCTTCAGATCACCACCACCACCACCTTGGTGGTGGCCTTAAGTTTCTTCATTCTCTTTCATCACCTCCTGTTCGTGATTTTCAACTTGGTGGTTTAACTTTACCATTCCTTCATCACCCTCCAATTCCATCCACTAATTCCATCTATAACAACAATCAGTTTTCTGCTTTTGGAGATGTTTCAAATGCTCCAAGTTTCAACCTTGATCCTTCTTCTGGTACCACCACCCCAAGTTCTAATTTGCTTGGTTTGAATTACCCTTTTAATGGTGCAAATGCTGCAATACAAGGTGGTATGAGTTCAATGAACCTTCATAACACCAACCTTGCTTCTTCTATTGAGTCTTTAAGTTCTATAAACCAGGACTTGCACTGGAAGCTTCAGCAGCAGAGGTTGGCTATGCTGTTTGGTGGAGAAAACCAGAAAGATGATAGTAACCTTGAGATTAACCAGACCCAGAGGCCTCAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCGGAGACTTTCCCTATTGGGGTTTCAAGAAAAGAAGGTCCAAGTGGTGGTGGAGGGGATATACCAACTGAGTGGTTCTTTGGGAATTCTTATGCTTCAGTGACAACAACTCCTACACCAACTACTACTGATGGTGGCGGTGGACATGGCAATGACAATGATAATGGTAACAATTGGAATGGTAATGTTCATGGTTGGGGTGATGTCAATGTGCACCAGCAATATAGTTCTTTGCCCTAA 1101 0.4332 MMMSQDDETPPKPAATPKDNHENNNQQGSNSGSRKSGTGTTRPHEQSLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSIDSGGGTSSSDHHHHHLGGGLKFLHSLSSPPVRDFQLGGLTLPFLHHPPIPSTNSIYNNNQFSAFGDVSNAPSFNLDPSSGTTTPSSNLLGLNYPFNGANAAIQGGMSSMNLHNTNLASSIESLSSINQDLHWKLQQQRLAMLFGGENQKDDSNLEINQTQRPQPILFQNLEISKPETFPIGVSRKEGPSGGGGDIPTEWFFGNSYASVTTTPTPTTTDGGGGHGNDNDNGNNWNGNVHGWGDVNVHQQYSSLP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0529 366 MobiDBLite consensus disorder prediction 320 355 - -
Lan6g0529 366 MobiDBLite consensus disorder prediction 18 45 - -
Lan6g0529 366 MobiDBLite consensus disorder prediction 108 127 - -
Lan6g0529 366 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Lan6g0529 366 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Lan6g0529 366 MobiDBLite consensus disorder prediction 1 49 - -
Lan6g0529 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 28 366 - -
Lan6g0529 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 366 IPR045174 GO:0003700|GO:0006355
Lan6g0529 366 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0529 Lan-Chr6 4597868 4599591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0529 11 366 C2C2-Dof Transcription Factor Family AT5G65590 39.326 3.75e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan6g0529 zf-Dof 9.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0529 - - gmx:100780729 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0557 17 4553727 4555349 Lan6g0529 6 4597868 4599591 LSH
Lan18g0741 18 12771160 12772769 Lan6g0529 6 4597868 4599591 LSH