Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0134 ATGATCCAAGAACCGTTTTGTGGTGCTAGTCTCATAACAGGACAAAGGAAAATCTCCATTAACGGAGGAGGAGGAGTTCTACCTTCACCTACACCATCTTCTACTTCTCAATCTCCTTCTAGTTCCACAACCACCCATACCGCCACCCCACAAAACCAAAATTTGAGGTGTCCACGATGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCAGTCAACCTCGCCACTTCTGCAAGACATGCCGCCGCTACTGGACCAAAGGAGGTGCTCTCAGGAATGTTCCAATCGGAGGTGGCTGCCGGAAAAGCAAGAACGTGGTTGTGTCGAACTCGGCCGCGAAGGCTGCCACCACAAAAATGAAAGCAGTGGTATCAGAGCTCGAAAGGTCAGGGCTTGGTCCTGCAGGGTTTGTTAACGAGCTTCCAACAACCCCACTCCTATGGGATTCTCCACAAAATATTCACCTTTTGGCTTTACTCAAAGCTACTTCTCAAAACCAAAACCCTAACCCTAGTTCCAAGTCCGTTAATGATTTTGGGGTCAAAGAAGAAGGTAACTTCATAGGATCTCAGTCCCACTTGATGACTGAGCCGTTGTTTACAAATTTAAATCCAAGAACCCTAGGATATGATAGTGTTGGACAAGTTCCTTCATTGGGTTTTGGCAGCACATTTTGTAGAAGCAATGATCAGAATCAACCTCAACAACATAATAGCGGCTTTGTACTTAGGGAAAATCAAAACATGAGTGGAATACAAGAACTTTACAACAAGCTCAGGTCGTCATCATCATCAGGTAATTATTACTGTGATATCTCATCACCCATGTTGATGGGGAAATTGGCTTCTTCATCTTCTTTATCCAACATTTTGGAGTCTCCTTCAGTTGCTGGTGGCGAATTAGGGAGCTGGAACCCAACCCTTTCTTGGTGTAATCTTCCTACAAGCAATGTTATATTTGTCTGTGGGGGGAGCAGGTAA 993 0.4441 MIQEPFCGASLITGQRKISINGGGGVLPSPTPSSTSQSPSSSTTTHTATPQNQNLRCPRCDSSNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKNVVVSNSAAKAATTKMKAVVSELERSGLGPAGFVNELPTTPLLWDSPQNIHLLALLKATSQNQNPNPSSKSVNDFGVKEEGNFIGSQSHLMTEPLFTNLNPRTLGYDSVGQVPSLGFGSTFCRSNDQNQPQQHNSGFVLRENQNMSGIQELYNKLRSSSSSGNYYCDISSPMLMGKLASSSSLSNILESPSVAGGELGSWNPTLSWCNLPTSNVIFVCGGSR* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0134 330 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Lan6g0134 330 PANTHER F-BOX FAMILY PROTEIN 28 323 - -
Lan6g0134 330 MobiDBLite consensus disorder prediction 26 55 - -
Lan6g0134 330 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Lan6g0134 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 323 IPR045174 GO:0003700|GO:0006355
Lan6g0134 330 Pfam Dof domain, zinc finger 53 109 IPR003851 GO:0003677|GO:0006355
Lan6g0134 330 MobiDBLite consensus disorder prediction 20 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0134 Lan-Chr6 955031 960301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0134 27 116 C2C2-Dof Transcription Factor Family AT5G65590 61.386 9.77e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan6g0134 zf-Dof 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0134 - - jre:108995318 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0293 17 2050347 2051952 Lan6g0134 6 955031 960301 LSH
Lan18g1019 18 15239373 15241124 Lan6g0134 6 955031 960301 LSH