Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0747 ATGGGCAACCTCTTAGTTAAAAGTAAAAGGAGTAACCATCAAACTTCCACAGATGGTAAAGGAAGAGATGGAAGAATCACCTCCACCATAAGCACTAGTAATGTGTCATCTCTTTTCCCATCACCGCCACCTCGGCCGCCGCCGCAACTACCACAACCACAAGCACAATATTTCTCTAAGAAACCAAGTTTTGGGACAAATAATTTAGGACAAAGTTCAGCAGTTATAAACAAGAAGCAACATGTTAAGAAGTATACTTTGATTCCTGATAACTTCACAACGACCCTTGAACAGGTTACAACAGCCTTGAGAAATGAAGGTTTAGAATCATCCAATCTCATCTTTGGAATTGATTTCACCAAGAGCAATGAATGGTCTGGCAGAGTCTCATTCGATAAGAGAAGCCTACATGCTATTGGAGATACACCTAACCCTTATGAGAAGGCCATCTCTATTATTGGCAAAACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGTTACAACTCATGATCAAGAAGTGTTTAGTTTTCACAGTGATCATTCACCTTGTCATGGTTTTGAGGAAGTTCTAGCTTGCTACCAAAAAATAGTTCCATACTTGAAACTTTCAGGGCCTACTTCTTATGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGATAAAAATCATGGCCAATTCCATGTGCTGGTTATCATTGCAGATGGTCAGGTTACGAGAAGTGTTAACATTAGAGATGGAGAAATCAGTCCTCAAGAAGAGAAGACATACAAAGCAATTGTTGATGCAAGTGCATATCCCCTTGCTATTGTTCTGGTTGGAGTTGGTGATGGACCTTGGCAAGACATGAAAAAGTTTGATGACAAGATACAGGCACGTGATTTCGACAACTTTCAGTTTGTTAACTTTACTGGCATCATATCTAAAAATATTAGCCCCTCTGAGAAAGAAACAGCTTTTGCTCTGGCTGCTCTTATGGAGATACCCTTCCAATATAAAGCAACTGTTGAATTTGAAATGCTTGGAAATGTAACAGGAAGAGCAAAGAGAATAGTTCCAAAACCACCTCCACTTCCTTATTCTCGGCCTGCACCACCAGCTCGTGTACCAAGCATTTCATCATCATCCACAACAGATGATCAAAACCATATGGTCTGCCCTATTTGTCTGACCAATGGAAAGGATTTGGCATTTGGATGTGGGCACATGACTTGTAGAGATTGTGGAACAAGATTAACTACTTGTCCCATATGCCGAGAGAGGGTCACTACCCGTTTCAGAGTGTCCACTGGCTGA 1317 0.4108 MGNLLVKSKRSNHQTSTDGKGRDGRITSTISTSNVSSLFPSPPPRPPPQLPQPQAQYFSKKPSFGTNNLGQSSAVINKKQHVKKYTLIPDNFTTTLEQVTTALRNEGLESSNLIFGIDFTKSNEWSGRVSFDKRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDVTTHDQEVFSFHSDHSPCHGFEEVLACYQKIVPYLKLSGPTSYAPVIEAAIDIVDKNHGQFHVLVIIADGQVTRSVNIRDGEISPQEEKTYKAIVDASAYPLAIVLVGVGDGPWQDMKKFDDKIQARDFDNFQFVNFTGIISKNISPSEKETAFALAALMEIPFQYKATVEFEMLGNVTGRAKRIVPKPPPLPYSRPAPPARVPSISSSSTTDDQNHMVCPICLTNGKDLAFGCGHMTCRDCGTRLTTCPICRERVTTRFRVSTG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0747 438 Pfam Zinc finger, C3HC4 type (RING finger) 391 430 - -
Lan5g0747 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 437 IPR013083 -
Lan5g0747 438 PANTHER COPINE FAMILY PROTEIN 1 1 436 - -
Lan5g0747 438 Pfam Copine 135 348 IPR010734 -
Lan5g0747 438 CDD RING-HC_RGLG_plant 392 435 IPR045317 GO:0061630|GO:0070534
Lan5g0747 438 SMART ring_2 393 425 IPR001841 -
Lan5g0747 438 SUPERFAMILY vWA-like 111 292 IPR036465 -
Lan5g0747 438 MobiDBLite consensus disorder prediction 359 373 - -
Lan5g0747 438 MobiDBLite consensus disorder prediction 21 38 - -
Lan5g0747 438 MobiDBLite consensus disorder prediction 359 387 - -
Lan5g0747 438 SUPERFAMILY RING/U-box 384 431 - -
Lan5g0747 438 MobiDBLite consensus disorder prediction 39 53 - -
Lan5g0747 438 MobiDBLite consensus disorder prediction 1 63 - -
Lan5g0747 438 PANTHER UBIQUITIN-PROTEIN LIGASE RGLG2-LIKE PROTEIN, PUTATIVE-RELATED 1 436 - -
Lan5g0747 438 ProSiteProfiles Zinc finger RING-type profile. 393 426 IPR001841 -
Lan5g0747 438 SMART VWA_4 110 313 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0747 Lan-Chr5 19108096 19117977 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0747 5 19108096 19117977 Lan13g0639 13 5375790 5380424 PCT
Lan13g0639 13 5375790 5380424 Lan5g0747 5 19108096 19117977 PCT