Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0448 ATGGGAGTTCCAGCTTTCTATCGATGGCTCGCGGAGAAATATCCAATGGTGATTGTTGATGCGATTGAGGAAGAACCAGTGGTTATCGAAGGTGTTCAGATTCCAGTTGATACGAGTAAAGAGAACCCTAACAATATTGAATACGATAATCTCTATCTCGACATGAATGGCATCATTCACCCTTGCTTCCATCCTGAAGATAGGCCATCTCCGACCTCGTTTGATGAGGTGTTTGAATGCATGTTTGACTACATTGATAGGCTTTTTTGTATGGTGCGGCCTAGGAAGCTTCTCTATATGGCTATTGATGGTGTTGCACCAAGGGCTAAAATGAATCAACAACGTTCTAGGCGGTTTAGAGCTGCAAAAGATGCAGCTGATGCGGCTGAGGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGGATGCTTCCTCTCAAAGAAGAGTCACAGACTTTTGATTCAAATGTCATCACACCTGGAACTGAATTTATGGCTGTTTTGTCAGTTGCTCTTCAGTACTACGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATACGCCTGCAGAGAAATCTTAAAGGTTTTGATCCAAATACACGACACTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTTTGGCTACCCATGAAGTCCATTTTTCAATTCTTAGAGAGATTGTTTTTACTCCTGGACAAGACAAATGCTTCCTTTGTGGCCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAACGTAAGGCAGGAGAGTTTGATGAAAAAGGAGATGCTATTGTGGCTAAAAAGCCCTTCCAGTTCCTAAACATTTGGACTTTGAGGGAATACCTGGAGCATGAAATGAGAATACCTAATCTTTCTTTCAAGATTGAGTTTGAGCGCATCGTAGATGATTTTATCTTCATATGCTTTTTTGTTGGCAATGATTTCCTACCACATATGCCTACTCTAGAGATCCGTGAGGGTGCAATTAACTTGCTGATGGCAGTGTACAAGAAGGAGTTTAAGGCATTGGGTGGTTACTTAACCGATGGAAGCAAGCCAATTTTGAGCAGGGTGGAGCACTTTATTCAGGCTGTTGGATCTTATGAAGATAGAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAGCAGAAAGAATAAAGCGTGACAAGTCACATGCAAGAAGAGGAGATGATGCTGGGCCTCAAGCTCAACCAGAGTCTCTAGTTGCTGTTTCACGATTTCATGGATCTCGTCTTGCTTCAGCTCCATCACCTTCACCATATCAACCATCTGGGCATCGAAAACGCAATGAAGAGGATTCTCCTCATAAAGTTGCTAGGTTAACTTCATCAGGAGCAAGCGTTGCTGCTGCAATTGTCGAAGCCGAGAATAGTCTTGAAACAGATGTTCAAGATAACAAAGACGAATTGAAAGCTAAACTGAAGGAGGTACTTCGTGAGAAATCTGATGCGTTCAGCTCAAAAAATCCTGAAGAGGACAAGATTAAGTTGGGAGAACCAGGATGGAAAGAGAGGTACTATGAGGAAAAATTTTCTGCTGAAACTCCCGAGGAACGTGAAATGATACGGAAAGATGTTGTCTTGAAATACACTGAAGGTTTATGTTGGGTAATGCACTATTATTATGAAGGCGTTTGTTCTTGGAACTGGTTTTATCCTTATCATTATGCCCCCTTTGCGTCTGATCTCAAGGGCCTTGGTGAGCTTAATATCACCTTTAATCTAGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGTTCTCATGCACTCCCTGAGCCATATAGGAAACTTATGTCAGATCCAGACTCACCAATTATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGAAAACGATATGCTTGGCAGGGCATTGCGAAGTTGCCTTTTATTGATGAAACACGTCTTCTTTCAGAAGTTCGAAAAATTGAAAATTTGTTAACGCCGGACGAAACGCGACGAAATGCTATAATGTTTGACTTCCTTTTTGTGAACTCTTGTCATCCTCTCTCTGCGTGCATAAGTACACTCGACAACAAATGTAGAAACATGTCAGACAGTAAACGTGCTGAGATCAAGGAACAAATCGATCCTAACAAAAGGGATACTTGCAGTGGTGGAATGAATGGTTATCTATCCTTATGTGGTGGAGAACCTTGCCCCCCTGTCTTCAGGTCTCCTGTCACAAGCATGGAAGACATTATGGACAACCATGTCATATGTGCAATATATAGACTCCCAGATCCTCATAAACACATTCCCCAACCACCAGAAGGAGTTAAATTTCCTAACAAGATTGTGACAATTGGGGATCTTAAACCTGAACCTGTTTTATGGCATGAAGATTCAGGCAGGAGACATTATCAACAACAAAGTGCGAGGCAAAACCCTCCTGGATCTATTTCTGGCCCAGAGCTTGGAGAAGCAGCACACAGACTTGTCGTCAATTCATTACAGGGGAAGGTTGGCACTAGTGGATACCGCCATCCCAATAATGGTCCACCTCTTTCTTATGCTGCACCAAGGGGTCATCCACAACCATATCCACCAGTCCAAGGCCAACCACCATTTCAACCATACCCTGCTGCACCCGCCCCTCAGCAGTATGGCTATAATCAACCATATGTGCCACCACCTGCGCACAATCCTCATCATCAATCAAATTATCATGAAAGAAATCACCATCAACACCATAGATCACATCCTTATGGAAGAAATAATCATGGAAATGGAGGAAGTGGAAGGCATGGATATAATCAACAATCGGGAAATAATCAGAATGCTAGGTTTGTGAATGCGCCAGGTGCACATGCTAGTCACCCCAGGCAAAACTTCCAATCATCTAGACCTCCTTACCAGAACTGGGTTCCACGGAATAACTCGAATGATCCCAGAGAAAATGGTCAACATCCACCACCCAATCAATTTTCTCTATTAGATAGAAGAGGTAATAACAGGAAGCCAATGCCACCACATGGTTATAGTCACAAATAA 3135 0.4262 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIEGVQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFCMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAEEEARLREEFEREGRMLPLKEESQTFDSNVITPGTEFMAVLSVALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGDAIVAKKPFQFLNIWTLREYLEHEMRIPNLSFKIEFERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFKALGGYLTDGSKPILSRVEHFIQAVGSYEDRIFQKRARLHQRQAERIKRDKSHARRGDDAGPQAQPESLVAVSRFHGSRLASAPSPSPYQPSGHRKRNEEDSPHKVARLTSSGASVAAAIVEAENSLETDVQDNKDELKAKLKEVLREKSDAFSSKNPEEDKIKLGEPGWKERYYEEKFSAETPEEREMIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLGELNITFNLGTPFKPFDQLLGVFPAASSHALPEPYRKLMSDPDSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDETRLLSEVRKIENLLTPDETRRNAIMFDFLFVNSCHPLSACISTLDNKCRNMSDSKRAEIKEQIDPNKRDTCSGGMNGYLSLCGGEPCPPVFRSPVTSMEDIMDNHVICAIYRLPDPHKHIPQPPEGVKFPNKIVTIGDLKPEPVLWHEDSGRRHYQQQSARQNPPGSISGPELGEAAHRLVVNSLQGKVGTSGYRHPNNGPPLSYAAPRGHPQPYPPVQGQPPFQPYPAAPAPQQYGYNQPYVPPPAHNPHHQSNYHERNHHQHHRSHPYGRNNHGNGGSGRHGYNQQSGNNQNARFVNAPGAHASHPRQNFQSSRPPYQNWVPRNNSNDPRENGQHPPPNQFSLLDRRGNNRKPMPPHGYSHK* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0448 1044 Gene3D - 1 136 - -
Lan5g0448 1044 Gene3D - 148 376 - -
Lan5g0448 1044 Gene3D - 607 704 - -
Lan5g0448 1044 Pfam Xrn1 helical domain 325 818 IPR041412 -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 868 1044 - -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 887 910 - -
Lan5g0448 1044 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Lan5g0448 1044 CDD PIN_XRN1-2-like 51 312 - -
Lan5g0448 1044 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Lan5g0448 1044 PANTHER 5'->3' EXORIBONUCLEASE 1 984 IPR027073 -
Lan5g0448 1044 PANTHER 5'-3' EXORIBONUCLEASE 1 984 - -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 413 437 - -
Lan5g0448 1044 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Lan5g0448 1044 MobiDBLite consensus disorder prediction 935 951 - -
Lan5g0448 1044 Coils Coil 112 142 - -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 829 852 - -
Lan5g0448 1044 PIRSF Exonuclease_Xrn2 1 1025 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lan5g0448 1044 Coils Coil 498 518 - -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 449 481 - -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 986 1028 - -
Lan5g0448 1044 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Lan5g0448 1044 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Lan5g0448 1044 MobiDBLite consensus disorder prediction 413 430 - -
Lan5g0448 1044 MobiDBLite consensus disorder prediction 959 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0448 Lan-Chr5 9801722 9812818 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0448 5 9801722 9812818 Lan3g0448 3 3976466 3985706 LSH