Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0442 ATGGGCCGTTACTCACTCTTGTCTCTCCTCCTCTTCGCCGCTGTAGCAACCGCCGTCATCTCCGATCAAGCAACCGACAGCGATGATCTCCTCATCCGTCAAGTCGTCGACGACGACGACTTACTGAACGCCGAACACCACTTCACTAAATTCAAAACAAAGTTCGGCAAAACCTACGATACGGAAGAAGAGCACAACCATCGCTTCGCTGTGTTCAAGTCAAACTTGCGCAGAGCCAAGAGACATGCCAAACTCGACCCCTCCGCCGTGCACGGTGTAACTAAATTCTCCGATCTTACTCCGAGGGAGTTCCGCCGCCAGTTCCTTGGCCTTAAGCGCCGTCTCCGTTTACCGGCTGATGCTCATAAGGCACCTATCCTTCCTACCAATAACCTCCCTGAGGATTTTGACTGGCGTGATAAGGGAGCTGTCACTGGCGTCAAGGATCAGGGCGCATGTGGTTCATGCTGGTCATTTAGTGCCACTGGAGCGTTGGAAGGAGCTCATTTTCTGGCTACTGGCAAGCTAGAGAGCCTTAGCGAGCAACAGCTTGTCGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCATGTGACGCAGGTTGTAATGGTGGGTTGATGAATAATGCTTTTGAGTACATACTTCAATCTGGGGGAGTACAGCGAGAAAAGGACTATCCTTACACCGGAAGAGATGGCAAATGCCATTTTGACAAAAGCAAAGTTGTTGCTTCAGTGTCAAATTTCAGTGTTGTATCTCTTGATACGGACCAAATTGCTGCAAATCTAGTGCATAATGGCCCTCTTGCAGTTGCTATCAATGCTGTCTATATGCAGACATATATCGGTGGTGTCTCATGCCCTTATATCTGCGGGAAACATCAGGATCATGGTGTTCTTTTGGTGGGTTATGGAGCTGATGAATATGCTCCTATTAGGTTGAAGAAGAAACCGTTCTGGATCATAAAGAATTCATGGGGGGAGAACTGGGGAGAGAATGGATACTACAAGATCTGCAGAGTTCGGAATATATGTGGAGTAGAGTCCGAGGTCTCAACTGTTGCTGCTATAAGTACATCCAGCAATTAA 1092 0.4808 MGRYSLLSLLLFAAVATAVISDQATDSDDLLIRQVVDDDDLLNAEHHFTKFKTKFGKTYDTEEEHNHRFAVFKSNLRRAKRHAKLDPSAVHGVTKFSDLTPREFRRQFLGLKRRLRLPADAHKAPILPTNNLPEDFDWRDKGAVTGVKDQGACGSCWSFSATGALEGAHFLATGKLESLSEQQLVDCDHVCDPEEYGACDAGCNGGLMNNAFEYILQSGGVQREKDYPYTGRDGKCHFDKSKVVASVSNFSVVSLDTDQIAANLVHNGPLAVAINAVYMQTYIGGVSCPYICGKHQDHGVLLVGYGADEYAPIRLKKKPFWIIKNSWGENWGENGYYKICRVRNICGVESEVSTVAAISTSSN* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0442 363 PANTHER CYSTEINE PROTEASE RD19C-RELATED 29 357 - -
Lan5g0442 363 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Lan5g0442 363 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Lan5g0442 363 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Lan5g0442 363 SMART Inhibitor_I29_2 48 104 IPR013201 -
Lan5g0442 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Lan5g0442 363 SUPERFAMILY Cysteine proteinases 45 355 IPR038765 -
Lan5g0442 363 Pfam Papain family cysteine protease 132 354 IPR000668 GO:0006508|GO:0008234
Lan5g0442 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 357 - -
Lan5g0442 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Lan5g0442 363 CDD Peptidase_C1A 133 355 IPR039417 -
Lan5g0442 363 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Lan5g0442 363 SMART pept_c1 132 356 IPR000668 GO:0006508|GO:0008234
Lan5g0442 363 Gene3D Cysteine proteinases 21 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0442 Lan-Chr5 9670198 9673499 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0545 10 4471656 4474517 Lan5g0442 5 9670198 9673499 LSH
Lan5g0442 5 9670198 9673499 Lan15g1199 15 20470598 20472840 PCT
Lan15g1199 15 20470598 20472840 Lan5g0442 5 9670198 9673499 PCT