Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0440 ATGATGAAATCAGGGATGGGAATTGATGATAGAAAACAAGTGAAGAGGACAGCACAAGCTAGTTCTAGGAAGGGGTGCATGAGAGGTAAAGGAGGTCCTGAGAATGCAAGTTGCACCTACAAAGGTGTTAGGCAGAGAACTTGGGGGAAATGGGTGGCCGAAATCCGTGAACCTAACCGAGGTGCTCGCCTCTGGCTTGGGACATTTGAAACCTCTCATGATGCTGCCTTAGCTTATGATGCTGCAGCGCGTAAGCTCTATGGTCCAGATGCAAAGCTCAATCTCCCAGAAGTGTATGCTACTTCTCAATGTCCAACTTCTAATACCACCCAAACCCAAATTTCTCAAGCGCAACAACACTTACCTCAACTTCAACATAATTTTGGTGTTCCCAACACCAATTCTCATAATCTCAATATGAATATAAACCAAGGAGGAGCTATTTCTTTGGCTTCTCATCAAGTTAGTGGTGTTGCACCAACTTACACCAACAATTCTATCATGTCACTTCCTTTGCAGGCTAATGTTATATCAATGGATCATTTTTCTAAGCCCATGGATAATGAGGACTTTCATTCAATTTTGGGCACATCCAATGAAATCATGCCAGTATATGATGAATCTATATGGAGAGAAGCTGCTATGTCACTAGATATAGCTATGTCACTAGATTTTCCTATGACCCCAGATATTGGAATTTATGCAGATGGAAACTTGGCAGAAATAAGTGCATGGGACTCTCTCCAAACTCCATGGTGCATGTAA 765 0.4222 MMKSGMGIDDRKQVKRTAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGPDAKLNLPEVYATSQCPTSNTTQTQISQAQQHLPQLQHNFGVPNTNSHNLNMNINQGGAISLASHQVSGVAPTYTNNSIMSLPLQANVISMDHFSKPMDNEDFHSILGTSNEIMPVYDESIWREAAMSLDIAMSLDFPMTPDIGIYADGNLAEISAWDSLQTPWCM* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0440 254 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lan5g0440 254 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lan5g0440 254 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lan5g0440 254 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 225 - -
Lan5g0440 254 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Lan5g0440 254 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lan5g0440 254 MobiDBLite consensus disorder prediction 1 38 - -
Lan5g0440 254 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Lan5g0440 254 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Lan5g0440 254 MobiDBLite consensus disorder prediction 1 17 - -
Lan5g0440 254 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 225 - -
Lan5g0440 254 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0440 Lan-Chr5 9597046 9597865 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan5g0440 AP2 3.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0440 5 9597046 9597865 Lan15g1197 15 20462366 20463664 PCT
Lan5g0440 5 9597046 9597865 Lan14g0936 14 15783385 15784855 PCT
Lan15g1197 15 20462366 20463664 Lan5g0440 5 9597046 9597865 PCT
Lan14g0936 14 15783385 15784855 Lan5g0440 5 9597046 9597865 PCT