Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0439 ATGTATACAAATCAAGCCTTTTCTTCTGGATCTTATGTCGAAATGTTGTCCGGGACGCCCCTATTACCTCATAACTACAATGAATCTGTCGGAGCAAAAAATGGGTTCAATTTTATTACAAGTATAAGTGACACAATGACTATGCACCATATTGATGGACATTCCAATGCTGAAACTAGTGATCTAGCATGCAACTCTTTTGTTGGTGCTGGAGATTCCCATGTTGTTCCAAGGACACAATTTGACCGTGACCAAAATGTGCGGGGCCAGGGCTTGTCTCTTAGCCTCGGGACATTGATGATGCCTTCTATTGCATCTGTCCCTCACTTCCAGCACCAATATCCCGACAACGGTTTCTCTTCACTAATGACTTCTTCTACTCCAAACATGAAAGGGAATGCATCTCTTAACGATGATGAGGTCGGTCTTAAGGAATTGAGAAATGCCGAATGCATGGAATCTGTATCTTCTGGGGGATTTCACAATAGTATCAGAAGGGAGGGTTTGTATAGTCCACACCCCCCAATCTGCATCAATGAAGGCCAGTCTGATCCATTCTTGAATGGATCATCAGGTTTTTCGAACATGATTTTAAACTCTCAATACGTTAAGGCAGCACAGGAGTTGCTTGACGAAATTGTTAATGTCCAAAAGGCTTTGAAGCAAACTGGATTGGAAAAACAACCGAGTTTTCGTGATATTGGATTAGATGGCTCCAAAGATTATGATGCAAAATCTAATAGTCAATCTATGCAAGTAACTTCAGGCCTTTCTGGTTCTATTACAAACACTTCATCCGAGCTTTCACCTGCAGAACGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTAGATGAGGTAGATAAAAGATATCGACAGTACTGCCATCACATGCAGAATGCGGTGTCATCTTTCGATATGGTTGCTGGGTGTGGAGCAGCTGAACCATATACTGCACTTGCTTTGCACACAATTTCTCGCCACTTTCGCTCTCTGCGTGATGCAATTAGCGGCCAAATTCAAGTGACTCAAAGGAGTCTTGGAGAACAAGAGGGAATACCTCGTCTTCGCTATGTTGATCAGAAGCTTAGACAACAAAAGGCCCTTCAGCAGCTTGGTGTAATGCGACAAACTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTCCGAGCATGGCTGTTTGAGCATTTCCTGAATCCTTATCCAAAAGATTCAGAGAAAATTATGCTTGCAAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAACGCAAGGGTTCGTCTTTGGAAACCAATGGTTGAAGATATGTACAAAGAAGAATTTGGTGATTCTGAGATGAGTAGCAACAATCTTTTACCAGAAAACATTCCTAATAAAGCTCCAAGAGTTCCAAAATCTGATAATAAAAGGGAAGAGTCTCATGTTCAACATGGCCAATTTCATGGAATGAAGTTCGACCATGCCTCTTCAACTACAGAATTAGAAGGAGGGGTCGAAAGTCATAATGATCAAAGGTTTAACATGAACAACAGTGACCCTTATTCAAGTGCACCTATCCAAATCAATCAAAATGGTGATAACTGCAGCCTAATGGCTTCTACTACTCCTGCCACATATGATTTATCGGAGTTGGGCAACTTTTCTTCTGGTGGGCGCATATCCCTTTCATTAGAGTTGAGGAACTGCGAAAGGAATGAATTTGTAGTGTCTAATGATAACATGCATAAAAGAAGTAATGAGACATTGGCTTCTTCCTCTGATACTGATTTGCTAGATTATCATTTCACAGACCCTGAAAAGCAACAACACAAGTTTAGCAATTCTCATTTATTACATGAGTTTGTTGTCTGA 1884 0.413 MYTNQAFSSGSYVEMLSGTPLLPHNYNESVGAKNGFNFITSISDTMTMHHIDGHSNAETSDLACNSFVGAGDSHVVPRTQFDRDQNVRGQGLSLSLGTLMMPSIASVPHFQHQYPDNGFSSLMTSSTPNMKGNASLNDDEVGLKELRNAECMESVSSGGFHNSIRREGLYSPHPPICINEGQSDPFLNGSSGFSNMILNSQYVKAAQELLDEIVNVQKALKQTGLEKQPSFRDIGLDGSKDYDAKSNSQSMQVTSGLSGSITNTSSELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHHMQNAVSSFDMVAGCGAAEPYTALALHTISRHFRSLRDAISGQIQVTQRSLGEQEGIPRLRYVDQKLRQQKALQQLGVMRQTWRPQRGLPESSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEDMYKEEFGDSEMSSNNLLPENIPNKAPRVPKSDNKREESHVQHGQFHGMKFDHASSTTELEGGVESHNDQRFNMNNSDPYSSAPIQINQNGDNCSLMASTTPATYDLSELGNFSSGGRISLSLELRNCERNEFVVSNDNMHKRSNETLASSSDTDLLDYHFTDPEKQQHKFSNSHLLHEFVV* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0439 627 Coils Coil 206 226 - -
Lan5g0439 627 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Lan5g0439 627 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 590 - -
Lan5g0439 627 MobiDBLite consensus disorder prediction 474 490 - -
Lan5g0439 627 SMART HOX_1 382 446 IPR001356 GO:0003677
Lan5g0439 627 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Lan5g0439 627 CDD homeodomain 382 443 IPR001356 GO:0003677
Lan5g0439 627 Gene3D - 378 456 - -
Lan5g0439 627 MobiDBLite consensus disorder prediction 455 490 - -
Lan5g0439 627 MobiDBLite consensus disorder prediction 242 272 - -
Lan5g0439 627 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Lan5g0439 627 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 30 590 - -
Lan5g0439 627 Pfam Associated with HOX 196 340 IPR006563 -
Lan5g0439 627 SMART prehox3 191 341 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0439 Lan-Chr5 9564204 9569496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan5g0439 POX 1.5e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0439 5 9564204 9569496 Lan3g1256 3 24651934 24655317 PCT
Lan15g1194 15 20448691 20451139 Lan5g0439 5 9564204 9569496 PCT
Lan14g0934 14 15770526 15773139 Lan5g0439 5 9564204 9569496 PCT
Lan3g1255 3 24648158 24650341 Lan5g0439 5 9564204 9569496 PCT