Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0415 ATGGCGAAATCCAGTGCTGACGATCTTGACCTTCGTCGAGCTTCCGAATCTGCAATCGAAGATCCAAATCAGAACATCATCATTTCAATTCGCGTTGCTAAGACTCACGGCATCATTGGAAAATCCTCCAAGCTTACTCGCCATATGGCCAAGCCTAGGGTTCTTGCTCTCTCCACAAAATCGAAAGGTCAGAGCACAACAGCTTTTCTTCGAGTTTTAAAATATTCTACCGGAGGAGTTCTTGAGCCTGCGAAACTATACAAGCTGAAGCACCTATCAAAAGTGGAAGTTATAACTAATGATCCCAGTGGATGCACGTTTACATTGGGATTTGATAACCTTAGAAGTCAGAGCGTGGCTCCTCCTTTGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTTCTTTGCATCTTAAACACCTGCAAAGATGTGTTGGGTCGCCTTCCTAAGGTTGTTGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATAGACCCTCAGTTTCTACTCAAAGGAATGTGCAAGATGGTGGTCCTGTTGCATCTGCTGTGCCTGAGAACGAATTGAAAGTCAACGTTGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCCCTTTTGGGAACTTATGTCATGGGTGTTGGTGAAGCAGAGGCATTCTCGGAAAGGTTGAAGAGAGAGCTTCAGGCTCTAGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTGATGGATGAGGTGATGCAAGGGCTTGAATCAGCAACAATTTGTGTGGAAGACATGGATGAGTGGTTAGGCATATTTAATGTGAAACTCCGGCACATGAGAGAGGATATTGAGTCAATAGAAACCCGTAATAACAAGTTGGTAATGCAATCAGTTAATAACAAGTCTCTGATCGAGGAGCTAGATAAGCTTGTCGAGCGATTGCGTGTCCCTTCTGAGTTTGCGGCATCTTTGACTGGGAGTTCATTTGATGAAGCTCGAATGCTTCAAAATGTAGAAGCATGTGAGTGGTTGACTAATGCCCTGCGTGGTATTGAAGCACCTAATCTAGACCCTGCATATGCAAACATGAGAGCTAGTCTTGACAAGAATTGCTTGGGTCCATTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGTAGAGAGGCCCGTGAGTTTGCAAATGAACTTCGTGCTAGTACTAAAGCATCCAGAAATCCAACTGTTTGGCTTGAAGGTTCCACAGGTTCTGGCCAGAATGCAAATGCTACTGACACTTCTACAGTCTCTGATGCTTATGCAAAGATGCTCACAATTTTTATCCCACTTCTGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACACTTGTTCCTCCTGGAGGTATTGTTAATGGTAACAAAATCGGATACGATGATGATGACAATGATGATGATTTGGGAATTATGGACATTGATGAGAATGATAGCAAATCTGGTAAAACTTCTGCAGAGCTTGCAGCTTTAAATGAATCACTTCAGGACTTGCTTGACGGAATTCAAGAAGACTTTTATGCTGTTGTGGATTGGGCGTACAAGATTGATCCTTTACGCTGCATATCAATGCATGGAATAACAGAACGCTATCTGTCTGGTCAGAAAGCTGACGCAGCAGGATTTGTACGCCGTTTGCTTGGTGACCTGGAGGCTAGGATATCTAGGCAGTTCAGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAGCGCAATGTTCGCCAAATGGGTGTCCTGTCCTACATTCCCAGATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGACAATCTAGGGATTTGGTTGACCAAGCATACACTAAATTTGTTGGCATAATGTTTGCAACTTTGGAAAAAATTGCTCAAACAGATCCGAAGTATGCAGATATGTTTCTACTAGAAAACTATGCTGCCTTTCAGAATAGTTTGTATGACCTTGCCAACGTTGTACCCACTTTAGCGAAGTTTTATCATCAAGCCAGTGAAGCCTATGAACAAGCTTGTACACGGCATATTAGCATGATTATCTATTATCAATTTGAACGTCTTTTCCAGTTTGCTAGAAGGATTGAAGACTTGATGTTCACTGTTGCTTCTGAAGAGATTCCTTTCCAGCTTGGTCTGTCAAAAATGGATCTTCGGAAGATGTTAAAATCCAGTTTATCTGGGGTTGACAAGTCCATTGCTGCTATGTATAAGAAACTACAGAAGAATTTGACTTCAGAGGAACTGTTGCCCTCCTTATGGGACAAATGCAAGAAAGAGTTTCTTGACAAGTACGAAAATTTTGCTCAACTTGTGGCTAAGATTTACCCTACTGAGAATATCCCTTCTGTAGCTGAGATGAGAGACCTTTTAGCTTCCATGTAA 2451 0.4264 MAKSSADDLDLRRASESAIEDPNQNIIISIRVAKTHGIIGKSSKLTRHMAKPRVLALSTKSKGQSTTAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVITNDPSGCTFTLGFDNLRSQSVAPPLWTMRNIDDRNRLLLCILNTCKDVLGRLPKVVGIDVVEMALWAKENRPSVSTQRNVQDGGPVASAVPENELKVNVEKELVSQAEEEDMEALLGTYVMGVGEAEAFSERLKRELQALEAANVHAILESEPLMDEVMQGLESATICVEDMDEWLGIFNVKLRHMREDIESIETRNNKLVMQSVNNKSLIEELDKLVERLRVPSEFAASLTGSSFDEARMLQNVEACEWLTNALRGIEAPNLDPAYANMRASLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNANATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGIVNGNKIGYDDDDNDDDLGIMDIDENDSKSGKTSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRRLLGDLEARISRQFSRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVGIMFATLEKIAQTDPKYADMFLLENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVASEEIPFQLGLSKMDLRKMLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYENFAQLVAKIYPTENIPSVAEMRDLLASM* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0415 816 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 370 - -
Lan5g0415 816 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 372 816 - -
Lan5g0415 816 Pfam Exocyst complex component Sec3 224 373 IPR019160 GO:0000145|GO:0006887
Lan5g0415 816 Pfam Exocyst complex component Sec3 509 799 IPR019160 GO:0000145|GO:0006887
Lan5g0415 816 Coils Coil 221 248 - -
Lan5g0415 816 Coils Coil 281 301 - -
Lan5g0415 816 PANTHER SEC3/SYNTAXIN-RELATED 372 816 - -
Lan5g0415 816 PANTHER SEC3/SYNTAXIN-RELATED 1 370 - -
Lan5g0415 816 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Lan5g0415 816 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0415 Lan-Chr5 9028545 9055374 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0599 10 5231962 5244355 Lan5g0415 5 9028545 9055374 LSH
Lan5g0415 5 9028545 9055374 Lan15g1196 15 20459964 20460973 PCT
Lan15g1196 15 20459964 20460973 Lan5g0415 5 9028545 9055374 PCT