Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0412 ATGGATGAACAAAGCTGTGAAAGATGCAAATCATGGGTGGAGAACATTTACTGGTCCCATTTTCAAGTCCTCCATTTTGCTCAAATTCTCCGCAGCGGTTATGATCAACACCTTGCACTTCCCCAAACATTTTCGAATAATTTGAAGGAAAAATTGCCAGAAAATGTGGGCCTTAGAGGTCCTTGTGACATTGTGTGGACAGTAGGATTGACAACAAGAGATGGTGCCATGTACTTCACACGTGGCTGGCCACAATTTGTGAAAGACCACTCTTTAAAAGAGAATGATTTGCTGGTGTTTAAGTACAATGGTGGTGAATCACTGTTTGATGTTTTGATATTTGATGGGGAGAGCTTCTGTGAGAAGGTGGATTCTTACTTTGTTCGAAAATGTGATCTTACTGAAAATGGGGTTGGATGCTTAAGCAAGAAAAGAGACACAGATAACCGTGTGAATGAAGTTAATACCCCTTCTAATGCTGGTGTCGAATGTGCTGGACCTGAGAAATCTGTACAGAATAATGGTTTCGTAGTGCCAGCAGCTATACCCTTTGAAGCTCGTAGTAGTGAAAGGACTATTAATGCTGGTGTTGAATCCGCTTCCCCCGGGCAACTTATACATTCTAATGGAAACACAGTGCCAATATCTGTTCCTTCTCAAACTACTGACACAAGTGTCAGGAATATAGCTTCTGCTGCTACGCATGTCCAAGCTAACCAAAGAGGAAGACCTCCAAAAGTATCTAGTGCTCATCAGGGAGTGGTTGACACTGATAATCGTGTGGAAGCTAATACCCCTTCCAATGCTGGTGTGGACTGTGCTGCACTTGAGAAATCTGTGCATCATAACACTGTAGTGCCAGTCGCTGTACCATTCGAAACTCCTATTGGTAAAAGGACTTTTGATGCTGTTGTTGAATCTGCTAACCCTCAGCAATTCATACATGCTAATGCTGGTGTGGACTGTGCTGCAATTGAGAAATCTGTGCATCATAACACTGTAGTGCCAGTCAGTTTACCATTCGAAACTCCTATTGGTGAAAGGACTTTTGATGCCATTGTTGAATCTGCTTCCCCTCAGAAATTCATACAAGCGAATGGAGACATAGTGCCAACAACTGATCCCTTGCAAACCACTGATAGAAGGTTCAAGATCAGGAAGCTAGTTTCTGCTGTTAAACATGTTCATACTAAGCAAAGAGGAAGTCCTCCTAAAATATCTAGTGCTGGTCAAGGAGTAGCTGACTGGGTGACTGATTCTGATGTTGATTCTTCGGGTCAAAGTGCCGCACACATTGAATTATACACCTCAAATAGAAGGCCTGTCACAGAACATGAGATAAATAGTGCCCAGCATTTGGCCCAGGCAGCATGTACCAAGAAAAGCTTGTTGATAGTTATGCAACCGGAGCAAGTATACACGGGATTCTACGTGTCAATACCAAGTAGGTGGGTAGTAGAACATCTCCCTCCACGATCTCAAGATCTTGTACTACGCGTCAATAAGACCGAATGGCATGTCAAATACTGCTACGACCGAATTCATTACACCGGGGAACTTACTCTTGGCTGGAGAAAATTTGCTCTTGATAATAACCTGGAAGAGTTTGATGTGTGTGTGTTTCAACCAATGGGCAAAGTCTATGGCACATGGCTCATTGATGTCAAAATTTTCAGAGTTGTTAAGGACATCACCCCGCCTACCATCCCTAAACCTCCTCTGAAAAGGGGCAGGAAAAGAGCAATCAGTAACATTCAGACAGAATAA 1767 0.4295 MDEQSCERCKSWVENIYWSHFQVLHFAQILRSGYDQHLALPQTFSNNLKEKLPENVGLRGPCDIVWTVGLTTRDGAMYFTRGWPQFVKDHSLKENDLLVFKYNGGESLFDVLIFDGESFCEKVDSYFVRKCDLTENGVGCLSKKRDTDNRVNEVNTPSNAGVECAGPEKSVQNNGFVVPAAIPFEARSSERTINAGVESASPGQLIHSNGNTVPISVPSQTTDTSVRNIASAATHVQANQRGRPPKVSSAHQGVVDTDNRVEANTPSNAGVDCAALEKSVHHNTVVPVAVPFETPIGKRTFDAVVESANPQQFIHANAGVDCAAIEKSVHHNTVVPVSLPFETPIGERTFDAIVESASPQKFIQANGDIVPTTDPLQTTDRRFKIRKLVSAVKHVHTKQRGSPPKISSAGQGVADWVTDSDVDSSGQSAAHIELYTSNRRPVTEHEINSAQHLAQAACTKKSLLIVMQPEQVYTGFYVSIPSRWVVEHLPPRSQDLVLRVNKTEWHVKYCYDRIHYTGELTLGWRKFALDNNLEEFDVCVFQPMGKVYGTWLIDVKIFRVVKDITPPTIPKPPLKRGRKRAISNIQTE* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0412 588 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 433 568 IPR044837 -
Lan5g0412 588 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 191 IPR044837 -
Lan5g0412 588 Pfam B3 DNA binding domain 36 115 IPR003340 GO:0003677
Lan5g0412 588 Pfam B3 DNA binding domain 465 546 IPR003340 GO:0003677
Lan5g0412 588 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 433 568 - -
Lan5g0412 588 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 191 - -
Lan5g0412 588 Gene3D - 20 120 IPR015300 -
Lan5g0412 588 ProSiteProfiles B3 DNA-binding domain profile. 23 117 IPR003340 GO:0003677
Lan5g0412 588 Gene3D - 442 562 IPR015300 -
Lan5g0412 588 CDD B3_DNA 461 559 IPR003340 GO:0003677
Lan5g0412 588 ProSiteProfiles B3 DNA-binding domain profile. 463 561 IPR003340 GO:0003677
Lan5g0412 588 SUPERFAMILY DNA-binding pseudobarrel domain 461 559 IPR015300 -
Lan5g0412 588 SMART B3_2 463 561 IPR003340 GO:0003677
Lan5g0412 588 SMART B3_2 26 117 IPR003340 GO:0003677
Lan5g0412 588 CDD B3_DNA 25 115 IPR003340 GO:0003677
Lan5g0412 588 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0412 Lan-Chr5 8968038 8975320 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan5g0412 B3 4e-10 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0604 10 5332638 5336144 Lan5g0412 5 8968038 8975320 LSH