Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0408 ATGCAACAATCCAACGGCTCTGATGCTTCCCCTCCACAACAACAACAACCGCCACAGTCGGAGCAAAAACAACAACAACCGCAGCAACGGCAACCGCCGCCGCCACAACAGTGGGTTCCGATGCAGTACCCGGCTATGGTAATGCCACACCACATGTTGCCGCGTCAACCTTACGCGCCGCCGCCACCGTACGTGGCGTACCATCCTCATCACCAGTACCAGCACGTGCCTCCTTCTCCTCATCAGCATCATGGATCCAATGGCGGCGAGAACAAGACCGTGTGGGTTGGTGATTTGTATCACTGGATGGATGAAAATTATCTTCATCGATGTTTCGCTTCTATCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCATACTGGTCTTTCAGAGGGTTATGGATTTGTGGAATTTAGTTCACATGCCACAGCCGAGAAAGTTTTGCAGACTTATGCTGGAATTTTGATGCCCAATACAGAGCAACCTTTCCGCCTGAACTGGGCGACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCCGATTTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACTGATAGCTTATTGCATGAAACATTTTCTGCTAAGTATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGTCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTTAGGTTTGGAGATGATAATGAGAGGAACCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGAAAATCATCTGGCTATCAACAAGGAGGCCAGTCAAATGGTGCATCCAGCCTATCTGAAATGGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCAAATGTTACAGATGATGATCTTAGACAGTCATTCTCCCAGTATGGTGAGATAGTTTCTGTTAAGATACCTGTTGGAAAGGGATGTGGTTTTGTCCAATTTGTTAATAGAAATAATGCTGAAGAAGCCTTGCAGAAGCTAAATGGTACAGCAATTGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGAAATCCAGCTAATAAGCAGCAGTTTAGGGTGGATTTTGGCAGCCCCTGGAATGGCGGGTATTATGGGGCCCCTGTTTATGATGGTTATGGATATGCTTTGCCACCGCCTCACGACCCAAGAACATATGCTGCTGCTTATGGGGCTTACCCTGTTTATCGTGGCCACCAACAACAAGTAAGCTGA 1266 0.4621 MQQSNGSDASPPQQQQPPQSEQKQQQPQQRQPPPPQQWVPMQYPAMVMPHHMLPRQPYAPPPPYVAYHPHHQYQHVPPSPHQHHGSNGGENKTVWVGDLYHWMDENYLHRCFASIGEISSIKVIRNKHTGLSEGYGFVEFSSHATAEKVLQTYAGILMPNTEQPFRLNWATFSTGDKGSDNVPDFSIFVGDLAADVTDSLLHETFSAKYPSVKAAKVVFDVNTGRSKGYGFVRFGDDNERNQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGASSLSEMDSTNTTIFVGGLDPNVTDDDLRQSFSQYGEIVSVKIPVGKGCGFVQFVNRNNAEEALQKLNGTAIGKQTVRLSWGRNPANKQQFRVDFGSPWNGGYYGAPVYDGYGYALPPPHDPRTYAAAYGAYPVYRGHQQQVS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0408 421 MobiDBLite consensus disorder prediction 1 40 - -
Lan5g0408 421 CDD RRM3_NGR1_NAM8_like 289 360 - -
Lan5g0408 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Lan5g0408 421 Gene3D - 280 393 IPR012677 -
Lan5g0408 421 SMART rrm1_1 291 358 IPR000504 GO:0003723
Lan5g0408 421 SMART rrm1_1 186 260 IPR000504 GO:0003723
Lan5g0408 421 SMART rrm1_1 93 168 IPR000504 GO:0003723
Lan5g0408 421 SUPERFAMILY RNA-binding domain, RBD 183 365 IPR035979 GO:0003676
Lan5g0408 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Lan5g0408 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 355 IPR000504 GO:0003723
Lan5g0408 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Lan5g0408 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 420 - -
Lan5g0408 421 CDD RRM2_SECp43_like 184 263 - -
Lan5g0408 421 CDD RRM1_SECp43_like 93 173 - -
Lan5g0408 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Lan5g0408 421 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 30 420 - -
Lan5g0408 421 SUPERFAMILY RNA-binding domain, RBD 59 173 IPR035979 GO:0003676
Lan5g0408 421 MobiDBLite consensus disorder prediction 1 27 - -
Lan5g0408 421 MobiDBLite consensus disorder prediction 69 90 - -
Lan5g0408 421 Gene3D - 91 171 IPR012677 -
Lan5g0408 421 Gene3D - 172 279 IPR012677 -
Lan5g0408 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
Lan5g0408 421 MobiDBLite consensus disorder prediction 262 284 - -
Lan5g0408 421 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0408 Lan-Chr5 8874678 8878280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0408 91 368 Eukaryotic Initiation Factors Gene Family AT1G71770 27.178 5.54e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0610 10 5430586 5434342 Lan5g0408 5 8874678 8878280 LSH
Lan5g0408 5 8874678 8878280 Lan3g1226 3 24442201 24445862 LSH
Lan5g0408 5 8874678 8878280 Lan3g1226 3 24442201 24445862 PCT
Lan3g1226 3 24442201 24445862 Lan5g0408 5 8874678 8878280 PCT