Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0309 ATGGAGAGTGAGTGGAAGACTAATGCTGAGATATCATCACCAAATTGCCCTAGGTGTGGCTCTTCCAACACCAAGTTTTGCTACTACAATAACTACAGCTTAACACAACCAAGGTACTTTTGCAAAGGTTGCAGAAGATACTGGACCAAAGGAGGATCCCTTCGCAATGTGCCTGTTGGTGGAAGCTGCAGAAAGAACAGAAGAAGTAATAAGAACTTAAGACAATCCATTGATAGTCTTACTTTCAAAAATTTACCTTGTAATAACCCAATTGAGCATTCTTATGATCCTAGAAGGACTACATATTCTAGCTCCTCAGTGGTAAGTACTTGTGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAATCAAAAGCCAGATTCAGGAGCTGAGGTTGAGAATCAAGATCAAGTGCATGCAGTTTTTGATCCTTCTCTAGAAAACTCAAGGCTATCTAACAAAGAAATTGGACCAAGTCCTATGTTGTCTGAAGAACTTGCTCTTAGTGCATGTTTTAATCTTCCAGAACATTCATCCACAGGATCCCATTTTTGTGATGGTAATAACCCTGTGTACTTTAGCGGGTTCAACTCTATGAAGATTCATCATGAATCTAGAATTGAGCAATGTAATAATCATCATGATTCTATCAATTTTGAGTTGCCTCCTTTGCCAGGTGAAGAGGAAGTGTCACATGATATGATGTGGACCAATTCTGAAATGATGGTAAACAATGCCTTTCAAGCTACCCAACCTTCACTTTTTGGACCCAATGCTCATGATGATGCAAACTTGCTAATGGGTAATTGGAGCCCTTTCGATTTGTCAAGGGATGCTTCTTTTCCTAAGCCTCGATAA 867 0.3933 MESEWKTNAEISSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGSCRKNRRSNKNLRQSIDSLTFKNLPCNNPIEHSYDPRRTTYSSSSVVSTCGPNIDLALVYANFLNQKPDSGAEVENQDQVHAVFDPSLENSRLSNKEIGPSPMLSEELALSACFNLPEHSSTGSHFCDGNNPVYFSGFNSMKIHHESRIEQCNNHHDSINFELPPLPGEEEVSHDMMWTNSEMMVNNAFQATQPSLFGPNAHDDANLLMGNWSPFDLSRDASFPKPR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0309 288 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 283 - -
Lan5g0309 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 283 IPR045174 GO:0003700|GO:0006355
Lan5g0309 288 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Lan5g0309 288 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Lan5g0309 288 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0309 Lan-Chr5 4951809 4952804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0309 7 282 C2C2-Dof Transcription Factor Family AT3G52440 40.278 3.76e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan5g0309 zf-Dof 9.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0309 - - aprc:113871380 362.073