Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0047 ATGAAGAAGAGTGAAAGTGGAGGGTATGTAAGAGCAGATCAGATAGATCTAAAGAGATTAGATGAACAACTTCAGAGGCATCTAAGTAGAGCATGTACAATGGAGAAGAATAAAGAGAAAGAAAAAGAAGAGTGTGAAGGAGAAAGGTCTACTTCAAGAACAAGACAAGAGTGGGAGATTGATCCTTCTAAGCTTATTATCAAAACTGTTATTGCTCGTGGCACTTTTGGTACTGTTCATCGTGGGATTTATGATGGCATAGATGTTGCAGTTAAGCTCCTTGACTGGGGAGAAGAGGGTCATCGGTCGGATGCTGAAATAGCTTCTCTGAGAGCAGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGATCATCCTAATGTAACCAAGTTTCTTGGCGCAACAATGGGATCCTCAGAGCTACAGATACAAACAGAAAATGGACATATAGGCATGCCAAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGTGGTGCGCTGAAGTCTTATCTGATTAAAAATCGGAGAAGGAAGCTAGCTTTCAAAGTCGTTGTTCAACTCGCACTTGATCTTGCGAGAGGGTTGAGCTATCTCCACCTGAAGAAGATTGTCCACCGAGACGTTAAAACAGAAAACATGCTTCTTGACAAGGCACGAACCTTGAAAATAGCTGATTTTGGAGTAGCTCGTATCGAAGCTTCCAATCCTCATGATATGACTGGTGAAACCGGCACCCTCGGTTACATGGCTCCTGAGGTTCTAAATGGTAATCCATACAATAGAAAGTGTGATGTCTACAGTTTTGGTATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCAGAAGTTACATCGGCCGTCGTACGACAGAACCTGAGGCCGGAGATTCCGCGATGTTGTCCAAGCGCGCTGTCAAATGTGATGAAAAGATGCTGGGATGCCAATCCTGATAAGAGGCCAGAGATGGATGAAGTGGTGACAATGTTGGAAGCTATTGACACTTCGAAGGGTGGAGGTATGATCCCTGGTGACCAACCTCAGGGTTGTTTATGTTTCCGCCGATATCGAGGACCTTGA 1107 0.4372 MKKSESGGYVRADQIDLKRLDEQLQRHLSRACTMEKNKEKEKEECEGERSTSRTRQEWEIDPSKLIIKTVIARGTFGTVHRGIYDGIDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKFLGATMGSSELQIQTENGHIGMPSNVCCVVVEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHLKKIVHRDVKTENMLLDKARTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSALSNVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPGDQPQGCLCFRRYRGP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0047 368 SMART serkin_6 65 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0047 368 MobiDBLite consensus disorder prediction 31 56 - -
Lan5g0047 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lan5g0047 368 Pfam Protein tyrosine and serine/threonine kinase 67 339 IPR001245 GO:0004672|GO:0006468
Lan5g0047 368 Gene3D Transferase(Phosphotransferase) domain 1 165 349 - -
Lan5g0047 368 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Lan5g0047 368 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Lan5g0047 368 PRINTS Tyrosine kinase catalytic domain signature 266 288 IPR001245 GO:0004672|GO:0006468
Lan5g0047 368 PRINTS Tyrosine kinase catalytic domain signature 310 332 IPR001245 GO:0004672|GO:0006468
Lan5g0047 368 ProSiteProfiles Protein kinase domain profile. 65 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0047 368 CDD STKc_MAP3K-like 71 339 - -
Lan5g0047 368 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 362 - -
Lan5g0047 368 PIRSF ILK 12 348 - -
Lan5g0047 368 SUPERFAMILY Protein kinase-like (PK-like) 50 339 IPR011009 -
Lan5g0047 368 Gene3D Phosphorylase Kinase; domain 1 53 148 - -
Lan5g0047 368 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0047 Lan-Chr5 529561 534358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0047 11 368 MAP Kinase Kinase Kinase AT3G22750 68.232 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan5g0047 PK_Tyr_Ser-Thr 4.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0047 - - gmx:100796762 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0047 5 529561 534358 Lan20g1193 20 17251936 17257504 LSH