Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1252 ATGCCTCCACAAAGTGTAGTTCTTTCACTTTTAATCATCTTCTTCTCATTTGGTTTGTGCCTTGGCTTTTACATAGAGGACAAACATAATGAAACAAATTATAGTTCTAAACAAAGTGTTAATGTTAATGACTATGGAGCAATAGCTAATGATGGAAGTGATGATACTGAGGCATTTGAGAAGACATGGAATGAAGCATGTTCTAGAGGTGCAACGCTTGTGGTACCGAAATATAGTGTCTACAATCTTAAGCCTGTAAAATTTTCAGGTCCATGCAAACACCATACATCCTTTAAGGTCTATGGAACCATAAAAGCATGGCATGATATATCTGCATATAAACATAGAGGGCTATGGATTATGTTTGATAATGTCAACAATTTCGTAGTTAATGGTGGTGGTGTCATCAATGGTGATGGTAGAAAATGGTGGCAGAACTCCTGCAAAGTTAACAAAACCCTTCCATGCAAACAGGCACCAACTTCTGTGATTTTCTCTGGATGCAACAACTTGAAAGTGAAAAACGTGAAGTTCAAAAATGCACCACAAATGCATCTTAGGTTCGACAAATGCTTCAATGTTAAAGCTTCAAAGTTAGTGATCACAGCACCTGAACACAGCCCTAACACTGATGGAGTTCACATCAGTGGAACACGAAATATGAACATAAGGAACAGTGTCATTGGTACAGGTGATGACTGTATTTCAATAGTAAGTGGGTCACATTATATTGGTGCTACTGATATCAAATGTGGACCAGGACATGGAATCAATATTGGAAGCTTAGGAGCAGGTAACTCAGAAGCTTTAGTCTCCAATGTAATAGTTAACAGAGCCACCTTGACTGGATCTACTAATGGAGTTAGAATAAAGTCATGGCAGGGAGGTTTTGGATATGCAAAAAACATCAAATTTCTGAACATAGCAATGCGAAATGTGACTAATCCCATAATCATAGATCAAAACTACTGTGATCGTAAAGGGCCATGCCCTGAGCAGGACTCGGCAGTAAAAATAAGCAACGTGGTGTACAAAAACATCACAGGAACAAGTGCTTCAAAAGTGGCAATCAAATTTGATTGCAGCAAAGCAGTCCCTTGCAAAGGAATCCAGTTGAAAGATGTGACTTTAACAAGTGAAAACAATGGTGACACCACTGCTACATGTAACAACGTTGAATATTCCAAAAAAGGAAAACTTCACCCTCAGTGCTCTTATTGA 1221 0.3849 MPPQSVVLSLLIIFFSFGLCLGFYIEDKHNETNYSSKQSVNVNDYGAIANDGSDDTEAFEKTWNEACSRGATLVVPKYSVYNLKPVKFSGPCKHHTSFKVYGTIKAWHDISAYKHRGLWIMFDNVNNFVVNGGGVINGDGRKWWQNSCKVNKTLPCKQAPTSVIFSGCNNLKVKNVKFKNAPQMHLRFDKCFNVKASKLVITAPEHSPNTDGVHISGTRNMNIRNSVIGTGDDCISIVSGSHYIGATDIKCGPGHGINIGSLGAGNSEALVSNVIVNRATLTGSTNGVRIKSWQGGFGYAKNIKFLNIAMRNVTNPIIIDQNYCDRKGPCPEQDSAVKISNVVYKNITGTSASKVAIKFDCSKAVPCKGIQLKDVTLTSENNGDTTATCNNVEYSKKGKLHPQCSY* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1252 406 Pfam Glycosyl hydrolases family 28 71 393 IPR000743 GO:0004650|GO:0005975
Lan4g1252 406 Gene3D - 25 404 IPR012334 -
Lan4g1252 406 PANTHER POLYGALACTURONASE QRT2 31 394 - -
Lan4g1252 406 SUPERFAMILY Pectin lyase-like 37 405 IPR011050 -
Lan4g1252 406 ProSitePatterns Polygalacturonase active site. 248 261 IPR000743 GO:0004650|GO:0005975
Lan4g1252 406 PANTHER - 31 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1252 Lan-Chr4 20844166 20848541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1252 24 405 Glycoside Hydrolase AT3G07970 56.218 5.92e-154 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1252 K01184 - gmx:100796446 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0831 20 7639982 7641933 Lan4g1252 4 20844166 20848541 LSH
Lan7g0028 7 150896 153473 Lan4g1252 4 20844166 20848541 PCT
Lan7g0758 7 6608248 6609676 Lan4g1252 4 20844166 20848541 PCT
Lan13g0692 13 6253336 6255176 Lan4g1252 4 20844166 20848541 PCT