Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1591 ATGCCAAATCAAAAACCCATTTCACAAACCTCCTTGATTCTCTTCCTTTCACTGTTTCTTCTCATCATTGTACCTGAAGTAACCTCAAAATCCACCATAGAACCATGCACCAACTCAGACTCATGCAATGCACTTCTTGGCTACACTCTCTACACTGACCTTAAAGTCTCTGAGGTAGCTTCCCTTTTCCAAATAGACCCTATTTCTCTACTAACAGCCAATTCCATAGACATATCCTACCCTGATATTGAACACCACATTCTCCCTTCAAACCTCTTCCTCAAGATCCCTATTTCATGTTCCTGTGTGGATGGTATTCGGAAATCAGTGTCCACACAATACAAGACTAGGCCTTCAGATAGTCTTTCGTCGATTGCGGATTCGGTTTATGGAGGTCTTGTATCTGCTGACCAGCTCAGGGAGGCTAATTCTATAACTGACTCTTCTGTCCTTGATGTTGGGCAGAACCTTGTTGTGCCTTTGCCTTGTACTTGCTTCAATGGCACTGATAATTCTTTGCCTGCAATTTATTTGTCATATGTGGTTAAACAGGTTGATAGTTTGGCCGCAATTGCGGCTAAGTATTTCACAACTCTTACTGATTTGATGAATGTTAATGCCTTGGGAAGCACTGCTATTGATGATGGTGATATTCTTGCTGTTCCTATACCAGCTTGCGCTTCAAATTTTCCAAAATATGCCTCTGATTACGGTTTGCTTGTTCCTAATGGAAGTTATGCCATCACAGCAGGCCACTGTGTGCAGTGTAGTTGTGGACCACGAAACCTGAATTTGTATTGTATGCCGTCTTCCCTGGCTGCTTCATGCTCCAGCATGCAATGTAAAAGCAGCAATCTTATGATTGGGAATGTTACACTGCAACAGACTGGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGTATTGCCAATGGCACCATAATAACAACGTTGTCTCCGTCTCTTCAGCCTCGATGCCCTGGACCACAAGAATTCCCGGATCTTATAGCCCCGCCTACAACTGTTACGAGCGAATCAATATTTGGACCAGCACCAGCACCTCAGTCACATGGAAATGGTCTAACAACACCCAAATCTTCGGTGGTGCCTTCAACGGGACCATTTCCAGGATTCTCACCCGCAAACGGCCCTGTTAGTGGGATTGCGTCTGCGGCCTCTGCTGCTTGCTCCTTGGTGAATCCATTGCCTGCAACTTTGACATCTGCACTTTTGTTATTACTTGTCACGTTGATGCTCCCGGAAGCATTGTAA 1275 0.4447 MPNQKPISQTSLILFLSLFLLIIVPEVTSKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANSIDISYPDIEHHILPSNLFLKIPISCSCVDGIRKSVSTQYKTRPSDSLSSIADSVYGGLVSADQLREANSITDSSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVKQVDSLAAIAAKYFTTLTDLMNVNALGSTAIDDGDILAVPIPACASNFPKYASDYGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPSSLAASCSSMQCKSSNLMIGNVTLQQTGGGCNVTSCNYDGIANGTIITTLSPSLQPRCPGPQEFPDLIAPPTTVTSESIFGPAPAPQSHGNGLTTPKSSVVPSTGPFPGFSPANGPVSGIASAASAACSLVNPLPATLTSALLLLLVTLMLPEAL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1591 424 Gene3D LysM domain 166 230 IPR036779 -
Lan3g1591 424 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Lan3g1591 424 SUPERFAMILY LysM domain 178 223 IPR036779 -
Lan3g1591 424 CDD LysM 112 159 IPR018392 -
Lan3g1591 424 Gene3D LysM domain 106 165 IPR036779 -
Lan3g1591 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 23 373 - -
Lan3g1591 424 CDD LysM 179 221 IPR018392 -
Lan3g1591 424 Pfam LysM domain 114 160 IPR018392 -
Lan3g1591 424 Pfam LysM domain 180 222 IPR018392 -
Lan3g1591 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 23 373 - -
Lan3g1591 424 SMART LysM_2 179 222 IPR018392 -
Lan3g1591 424 SMART LysM_2 113 160 IPR018392 -
Lan3g1591 424 ProSiteProfiles LysM domain profile. 112 159 IPR018392 -
Lan3g1591 424 MobiDBLite consensus disorder prediction 348 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1591 Lan-Chr3 27536655 27539698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1591 4 398 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 66.583 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1591 - - gmx:100777292 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0800 15 17164417 17167730 Lan3g1591 3 27536655 27539698 LSH
Lan14g0612 14 12962919 12965782 Lan3g1591 3 27536655 27539698 LSH