Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1272 ATGAGGGTTGAGAGAAAGGAGAATAAGAATAGGATGGTTTCTATAGAAGAAGGTGGAGGAGAAGTTGTTGGGGTTCAAACTTTAGCTGCAGATATAAAGCTTCTCAAAGAAATGAAGGAACAACATGTGGTGGGTAAGAGTTTCAATACGGAGCTATGGCATGCTTGTGCAGGGCCTCTTGTATCGTTGCCTCAGGTTGGGAGTCTAGCTTATTACTTTCCTCAGGGACATAGTGAGCAGTTAGCAGCTTCAACTAGAAGGACAGCAGCGACGTCGCAGGTTCCGAACTATCCGAATCTTCCATCTCAGTTGCTATGCCAAGTCCAAAATGTCACACTTCATGCAGACCAAGAAACAGATGAAATATATGCTCAAATGAGCCTCCAACCACTAAATTCAGAAAATGATGTCTTTTCTATATCTGAGTTTGGGGTGAAGTCAAGTAAACATCCCAGTGAGTTTTTCTGCAAAACTTTAACTGCTAGCGATACTAGCACACATGGTGGATTTTCGGTACCACGTCGGGCTGCAGAAAAACTCTTTCCTCCTCTGGATTACGCAATGCAACCACCAACCCAAGAACTTGTTGTCCAGGATTTACATAACAATACATGGAAGTTTCGACATATATACCGCGGTCAGCCAAAGAGACACCTTCTCACAACTGGATGGAGTTTGTTTGTAGGCGTAAAAAGGCTTAAAGCAGGCGATTCTGTTATTTTTATCAGGGATGAGAAATCGCAGTTACTAGTTGGTATCAGGCACGCTAATCGTCAACAGACTACATTGCCATCATCAGTCCTTTCTGCTGATAGTATGCACATTGGTGTCCTTGCTGCTGCAGCTCATGCTGCCGCTAATCGAAGTCCATTCACTATTTTCTACAATCCAAGAGCATGCCCTTCAGAATTCGTTATTCCACTGGCTAAATACAGAAAAGCTGTATATGGGAGCCAAGTCTCAGTTGGTTTGAGATTTGGTATGATGTTTGAGACGGAAGAATCGAATAAGCGCCGATATATGGGAACTATAGTTGGCATCTGTGACTTGGATCCTTTAAGGTGGCCTAGTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTAGTGAAAAGCAGAAAAGAGTTAGTTCGTGGGACATAGAGACTCCTGAAAATTTCTTCATGTTTCCTTCTTTGACTTCAACTCTTAAACGACCATTGCAATCTGGATTGTTGGAAAATGACTGGAACACTCTGGTAAGAAGACCTTTTATGCGTGTTCCCGTGAATGGAACCACAGAGTTCTCGAGCACTATACCAAATCTGTACCAAGAACAAATGATGAAATTTCTTTTGAAGCCTCAACTTGTTAACAATACTGGAACCTGTTCATGGGTCCCTCAACAAGAGTTTGCTGCTAAGAGAGGGCCATCAGAAGAGTTCAAGTCGACATTGACAACAGATAACGAAAGAATTCTTGCAAGTTCAGTGGGCATGCCACAAAAAAATCTACATTATTTTCAAACTGAACAAGACCAATCTAATGCCTTGAATCCTCCAACCAAAGTTGATAATCCTTCATCTTCTGGAACAGTTACTGATTATTTAAAATTAGAACCCGAGTTGTTAAGTAATCATATGTTTAACTTTCCTTCCATGGAAGGCTGCAATGGTGAAAAAATGTCCACAAATTCTTTTAACCCCGAAAGCGTTGCTGGCCAATCGACATTCCTTAATCAAAACCAGAATCCAATAGGGGTTGATGTTCCTTCATCAGATTCCGCAATCGTGGATAGCCTACTTACTCAACTAGATAGTGATGAATGGATGATGTATTCTTCTTGCCAAAACGGGTTAACTGGACCTTTATCAGCTTTGCAAGAACATTCTGCACTTCCCTCTCAAGCAGTTGATATCCCCGTACCTTCAGTAAGCCAAGACATGTGTGATTCATATATCAAAAATTCAAAGTTCTTAACTCATGCCGAGATTTATGGCCTCAATTGCATATCTAGTTCAATAAACTTGAGGGGTCTCTCAGTTGAGAGCAACAATCAAAGTGAAATTTACAATAGCAACAATGTTATTGATGTTAGTAACAGTGCAAGTATCAGCATTGTTGATCCGCCTACTTCAAATGCCATTTTGGATGAGTTTTGCACATTGAAGGGCAAAGATTTTCTGAATCCATCAGATTGCATGGTGAGCAACATAAGTATGAACCAGGATGTTCAGTCTCAGATAACATCCACAAGTTTAGCCGAGTCACGCGCCTTTTCTGTGCAAGACATCCATGACAACTCAGGTGGTGCATCGTCCAGTCTTGTTGATTTTGATGAAAGCAGTTTTCTGCCAAACAATTCATGGTCACAACAAGTATCTGCACAGGTTGCACGCAGGCGTACCTATACGAAGGTTCAGAAGGCAGGTTCTGTAGGAAGATCGATTGATGTCACTAATTTCAAGAACTACGAGGAACTAATCAATGCAATTGAATGCATGTTTGGACTTGAGGGTCTGCTGAATGACACTAAAGGTTCAGGATGGAAGTTGGTATATGTAGATTATGAGCATGATGTTCTGCTAGTTGGGGATGATCCTTGGAAGGAATTTGTGGGTTGTGTCCGCTGCATAAGAATTCTATCACCGACCGAAGTTGAGCAAATGAGTGAAGAAGGGATGGCACTTCTTAATAGTGGTGCATTACAAGGGATGAATGGTTGCATATCAGGTGGCTAG 2730 0.4176 MRVERKENKNRMVSIEEGGGEVVGVQTLAADIKLLKEMKEQHVVGKSFNTELWHACAGPLVSLPQVGSLAYYFPQGHSEQLAASTRRTAATSQVPNYPNLPSQLLCQVQNVTLHADQETDEIYAQMSLQPLNSENDVFSISEFGVKSSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYAMQPPTQELVVQDLHNNTWKFRHIYRGQPKRHLLTTGWSLFVGVKRLKAGDSVIFIRDEKSQLLVGIRHANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYGSQVSVGLRFGMMFETEESNKRRYMGTIVGICDLDPLRWPSSKWRNIQVEWDEPGCSEKQKRVSSWDIETPENFFMFPSLTSTLKRPLQSGLLENDWNTLVRRPFMRVPVNGTTEFSSTIPNLYQEQMMKFLLKPQLVNNTGTCSWVPQQEFAAKRGPSEEFKSTLTTDNERILASSVGMPQKNLHYFQTEQDQSNALNPPTKVDNPSSSGTVTDYLKLEPELLSNHMFNFPSMEGCNGEKMSTNSFNPESVAGQSTFLNQNQNPIGVDVPSSDSAIVDSLLTQLDSDEWMMYSSCQNGLTGPLSALQEHSALPSQAVDIPVPSVSQDMCDSYIKNSKFLTHAEIYGLNCISSSINLRGLSVESNNQSEIYNSNNVIDVSNSASISIVDPPTSNAILDEFCTLKGKDFLNPSDCMVSNISMNQDVQSQITSTSLAESRAFSVQDIHDNSGGASSSLVDFDESSFLPNNSWSQQVSAQVARRRTYTKVQKAGSVGRSIDVTNFKNYEELINAIECMFGLEGLLNDTKGSGWKLVYVDYEHDVLLVGDDPWKEFVGCVRCIRILSPTEVEQMSEEGMALLNSGALQGMNGCISGG* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1272 909 Pfam AUX/IAA family 790 883 IPR033389 -
Lan3g1272 909 Gene3D - 319 390 - -
Lan3g1272 909 SUPERFAMILY DNA-binding pseudobarrel domain 145 284 IPR015300 -
Lan3g1272 909 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 902 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan3g1272 909 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan3g1272 909 CDD B3_DNA 154 254 IPR003340 GO:0003677
Lan3g1272 909 Gene3D - 794 887 - -
Lan3g1272 909 Gene3D - 153 256 IPR015300 -
Lan3g1272 909 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Lan3g1272 909 SUPERFAMILY CAD & PB1 domains 799 877 - -
Lan3g1272 909 SMART B3_2 155 257 IPR003340 GO:0003677
Lan3g1272 909 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Lan3g1272 909 PANTHER AUXIN RESPONSE FACTOR 5 35 902 - -
Lan3g1272 909 ProSiteProfiles PB1 domain profile. 798 882 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1272 Lan-Chr3 24767552 24773047 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan3g1272 AUX_IAA 4.2e-10 CL0072