Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1256 ATGTATCCCAACCATCAAGGCTTTTCTTCAGTGTCCTATGCAGACTTGTTATCTGGGAATAGTCCTTTGTTACCTCATAACTATAGTGAAGCACAAAATGAGGTGAAGTTTATCACAGCTATTGGTGATACAGTTACAATGCAATCTATTGATGGAAATGTTCCAAGGACACAAATGGGTATTGGAGATAATACTGAGCAAAATGTACAGTGCCAGGGCTTATCTCTTAGTCTAGGGACACTAATGCCTTCTACTGAGTCATCTGTCCCTTCATTTCAGTACCATTATCCCAACAACACTGGTCTCTCATCCATAATAACAGATCATGATCTTATCAAAAGGGAGGGTTTGTATAACCAGCACCCCTCAATGCAATCTGATCCATGCTTGCAGGGCTCATCGGGTTTTTCGAACAATGTCCTAAACTCCCAATACCTTAAAGCAGCACAGGAGTTACTTGATGAAACAGTTAATGTCCGAAATGCTTTGAGTTTGAATCAACATGGAGCGGAAAAACAAGAAAACAATTTTCGTGGCATTGGATTAGATGGCTCCAAAGATTCTGATGGAAAATCTTCTGGCCCTAATGGTTCTACTGCCAACCCTTCTTGTGAACTATCACCGGAAGAACGAAAGAATTTGTTGGACAAGAAGACAAAACTTTTGGCTATGCTGGATGAGGTAGACAGAAGATATCGACAATATTGCCATCAAATGCAGATTGTGATGTCATCTTTGGATATGGTTGCTGGTTGTGGAGCTGCTGAACCTTACACTACACTTGCTTTGAGAACAATTTCTCGCCACTTTCGGTGCTTGCGTGATGCTATCAGCAGCCAAATTCAAATGACACAAAGGAGCCTTGGGGAGCAAGAAGGAATACCTCGTCTGCGTTATGTGGATCAGAAGCTTAGACAGCAAAAGGCACTTCAGCAGCTCGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATACTCCGTGCTTGGCTCTTCGAGCATTTTCTTAATCCTTACCCCAAAGATTCAGAGAAAGTTATGCTAGCAAGGCAAACAGGCTTGTCCAGAAACCAGGTGGCGAATTGGTTCATCAATGCGCGGGTGCGTCTTTGGAAGCCAATGGTCGAGGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGATGAGCTGCAATGTTTCATCTGAAAATACTGTCTTAGCTAAAAGAGACGGAGTTCAAGCATCTGATAATAAATGGGAAGAGTCTCGGGACAATTTAGTAACTATTGATGACAGTGTCCAACAAGGGCAACTTGATGGGTTGAACCCTTCTACTACAGAATTGAATAGAGGGATTTATGAAGGAGAAAATTTCAATGGCAACCAAAGCTTAGGCATGAATAATACTAACACTTTTTATTCAAGTGTACCTATCCCAACCAACCAGAATGGTGATGACAGTGTAATGGCTTCTACTAATACTCCTGCTGCATATGATTTATCCGAGTTGGGTAACTTTACTGTGGGTGGCCAAGTCTCTCTTGCATTGGAGTTAAGGAATTGTGAAAATGATGGATTTTCTATGTCGAATGATGCCAGCAATAAGAGACATAATCGTCCGGAATTGGCTTCGTCCTCGGAGACTGATTTGCTAGATTATCATTTCACAGAGTCGGGAAAACAACAACACAGGTTTGGCAATCCTCATCTGTTGCATGATTTTGTGGTATGA 1731 0.4206 MYPNHQGFSSVSYADLLSGNSPLLPHNYSEAQNEVKFITAIGDTVTMQSIDGNVPRTQMGIGDNTEQNVQCQGLSLSLGTLMPSTESSVPSFQYHYPNNTGLSSIITDHDLIKREGLYNQHPSMQSDPCLQGSSGFSNNVLNSQYLKAAQELLDETVNVRNALSLNQHGAEKQENNFRGIGLDGSKDSDGKSSGPNGSTANPSCELSPEERKNLLDKKTKLLAMLDEVDRRYRQYCHQMQIVMSSLDMVAGCGAAEPYTTLALRTISRHFRCLRDAISSQIQMTQRSLGEQEGIPRLRYVDQKLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLNPYPKDSEKVMLARQTGLSRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSCNVSSENTVLAKRDGVQASDNKWEESRDNLVTIDDSVQQGQLDGLNPSTTELNRGIYEGENFNGNQSLGMNNTNTFYSSVPIPTNQNGDDSVMASTNTPAAYDLSELGNFTVGGQVSLALELRNCENDGFSMSNDASNKRHNRPELASSSETDLLDYHFTESGKQQHRFGNPHLLHDFVV* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1256 576 Pfam Homeobox KN domain 337 376 IPR008422 GO:0003677|GO:0006355
Lan3g1256 576 Gene3D - 317 394 - -
Lan3g1256 576 SUPERFAMILY Homeodomain-like 321 387 IPR009057 -
Lan3g1256 576 ProSiteProfiles 'Homeobox' domain profile. 317 380 IPR001356 GO:0003677
Lan3g1256 576 MobiDBLite consensus disorder prediction 189 206 - -
Lan3g1256 576 SMART prehox3 134 279 IPR006563 -
Lan3g1256 576 SMART HOX_1 320 384 IPR001356 GO:0003677
Lan3g1256 576 Pfam Associated with HOX 140 278 IPR006563 -
Lan3g1256 576 CDD homeodomain 320 381 IPR001356 GO:0003677
Lan3g1256 576 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 25 536 - -
Lan3g1256 576 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 536 - -
Lan3g1256 576 MobiDBLite consensus disorder prediction 174 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1256 Lan-Chr3 24651934 24655317 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan3g1256 POX 6.5e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0439 5 9564204 9569496 Lan3g1256 3 24651934 24655317 PCT
Lan3g1256 3 24651934 24655317 Lan3g0463 3 4215109 4219565 PCT