Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1255 ATGTCTCACTCCATTACCCATCAAAACCAATATGAGAACCCAGAGTTAGATGCTTATGGCTCTTCTTTAAGAAACAATAGTGCATATCCTGAGGACTTAGGAGTATTTCCAAGCACCTTCCAATCCATTGGAGACAGAATGTCACTAGCTGAAGGGTCAGAAATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCTAATGAGAGGAATCACCAAACTCAAGGCTTATCCCTTTCTTTAAGCTCTCATATGCTTATCCCTTCTGATGAGTATAGGCATAGACCCTTAAATCAGGGTCTCATGAACCCCAATTACTTCATGCATGGACAAGAAACAAGGGAACCTTGTAATAATGCAGTGGAGCAGCATCTAAGTAGTGAATATTTTTTCACTAGTGGTGCCACTTTTGCTTCATCTTCCACCTCATTGAACCTTTCTCCTTCAACCTCTTATGGAACTGAGTCCTTTGCTGCTGTCATTGGGAACTCTAGGTACCTTAAGCCAGCACAATCCCTTCTTGAAGATGTAATTGGTGTTGGTGCAAATGTGGTTGATAGAATGAATGAAAAGTATGTGGAGAAGTTGTTTCATGGCAGTAGAACAGGTGCAAGAACACTTTCCTCAGAGCTAAAAGCAGAATTAAGGAACATGGGACCTTTATTAGCTGAAAAACAAGAACATCAAATGAAAATTGAAAAGTTGATTGCTTTGTTGGATGAGGTAGAGAGCAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCTAAGTGTTACACTGTTTTGGCACTTCAAGCCATGTCAAGGCATTTTTGCAGCTTGAGAGATGCAATAGTGTCACAAATAAATGTGGAGAAGAGAAAACTCTTTCAAGATTTGCCTAAAATCAATAGTGGATTATCTCAACTAACTCTATTTGATAGAGACAATAGACAGAGTAGAATGTCACTCCAACAACTTGGGATTATCCACAGCCAACGCCAAGTATGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTAACAATTCTCCGGTCTTGGCTTTTCGAACACTTTCTCCACCCTTATCCAAATGATTCTGAGAAGTTAATGCTAGCTTCTCAAACAGGTTTAACTAAAAACCAAGTATCAAATTGGTTTATAAATGCTAGAGTAAGGCTATGGAAACCAATGATAGAAGATATGTACAAAGAAGAGTTTGGAGATTCTTCAGAAGATTCCAACCCACAAGCTAACAACTATTTAACAAGGGAAGACACCACATACTGTGTGGAGGATTGA 1323 0.3968 MSHSITHQNQYENPELDAYGSSLRNNSAYPEDLGVFPSTFQSIGDRMSLAEGSEMSHTRHLMDLLGAANERNHQTQGLSLSLSSHMLIPSDEYRHRPLNQGLMNPNYFMHGQETREPCNNAVEQHLSSEYFFTSGATFASSSTSLNLSPSTSYGTESFAAVIGNSRYLKPAQSLLEDVIGVGANVVDRMNEKYVEKLFHGSRTGARTLSSELKAELRNMGPLLAEKQEHQMKIEKLIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTVLALQAMSRHFCSLRDAIVSQINVEKRKLFQDLPKINSGLSQLTLFDRDNRQSRMSLQQLGIIHSQRQVWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEDMYKEEFGDSSEDSNPQANNYLTREDTTYCVED* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1255 440 MobiDBLite consensus disorder prediction 419 433 - -
Lan3g1255 440 MobiDBLite consensus disorder prediction 413 434 - -
Lan3g1255 440 Gene3D - 339 419 - -
Lan3g1255 440 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 45 423 - -
Lan3g1255 440 Coils Coil 226 253 - -
Lan3g1255 440 SMART HOX_1 344 408 IPR001356 GO:0003677
Lan3g1255 440 MobiDBLite consensus disorder prediction 1 24 - -
Lan3g1255 440 ProSiteProfiles 'Homeobox' domain profile. 363 404 IPR001356 GO:0003677
Lan3g1255 440 SUPERFAMILY Homeodomain-like 350 411 IPR009057 -
Lan3g1255 440 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 423 - -
Lan3g1255 440 SMART prehox3 156 294 IPR006563 -
Lan3g1255 440 Pfam Associated with HOX 161 293 IPR006563 -
Lan3g1255 440 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Lan3g1255 440 CDD homeodomain 344 405 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1255 Lan-Chr3 24648158 24650341 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan3g1255 POX 2.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1194 15 20448691 20451139 Lan3g1255 3 24648158 24650341 LSH
Lan14g0934 14 15770526 15773139 Lan3g1255 3 24648158 24650341 LSH
Lan3g1255 3 24648158 24650341 Lan5g0439 5 9564204 9569496 PCT