Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1239 ATGCCTACCTTAGAACCTTTGCTAGAGCCAAACCTCTCCCTAAATATATGCCAACCCTTCATTTCAGATTCTGAAGCCAAAGAAATGACAAGCTACAATGGATTAACATTAACTACAAAAACAATTTCCAATATGTGCTTTTCACCCTCTGATTCTGGTAGTGGTTGTAATGGAAGTAATGGCTTTTTCCACAATGATACTACTGTCCTTAACCTTGGTCATGGTGAACCTACATTGAGCTTAGGCTATGAAACTTCAGATTTGAACCCCCAACCCATAGTAAAAGGAAGAAATTTCAATCACAAGCTCCATAACTATCAACCTTGTATATATAGCCGCGATTTCAAACGAAATGCAAGAGTTGTAAAAAGAAGTATCAGAGCTCCTAGAATGAGATGGACTGCTACCCTCCATGCTCATTTTGTTCATGCAGTTCAGCTTCTTGGTGGTCCTGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAGAGCACTGACAAGGGAAGAGGTCATGGACAGACAGAAATGAGGTTGAGGCAAAGGCCAGGGACAGTAGATTTGCATGGAGTCTCAACTTGTGAGAGATCTAATTTGCCAAAGTCTATGCAAAAATCCTATAGGGAATCATGGCAATCATCAAATAGTAGACAAAACCCCAAAATCAATTTGATGTATTCTCATCTCAACAGAAATGATGAAATCAGGATGAGTGGACATAATTGTGGAGGCATATGGAATTGCACAAAGGAGAGATTGGATTATAGTTCTTTGTCACGTTCTGAAGCGATGCTTGATTTAGAATTCAAACTTGGAAGGCCTGCTTTGCAAACAGATTCAACACACTGA 909 0.3982 MPTLEPLLEPNLSLNICQPFISDSEAKEMTSYNGLTLTTKTISNMCFSPSDSGSGCNGSNGFFHNDTTVLNLGHGEPTLSLGYETSDLNPQPIVKGRNFNHKLHNYQPCIYSRDFKRNARVVKRSIRAPRMRWTATLHAHFVHAVQLLGGPERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGRGHGQTEMRLRQRPGTVDLHGVSTCERSNLPKSMQKSYRESWQSSNSRQNPKINLMYSHLNRNDEIRMSGHNCGGIWNCTKERLDYSSLSRSEAMLDLEFKLGRPALQTDSTH* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1239 302 Gene3D - 128 185 - -
Lan3g1239 302 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 300 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lan3g1239 302 SUPERFAMILY Homeodomain-like 126 183 IPR009057 -
Lan3g1239 302 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 300 - -
Lan3g1239 302 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 182 IPR006447 GO:0003677
Lan3g1239 302 Pfam Myb-like DNA-binding domain 130 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1239 Lan-Chr3 24529567 24531548 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan3g1239 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0603 10 5313277 5316900 Lan3g1239 3 24529567 24531548 LSH
Lan5g0413 5 9009047 9013509 Lan3g1239 3 24529567 24531548 LSH
Lan15g1172 15 20324820 20328634 Lan3g1239 3 24529567 24531548 LSH
Lan10g0603 10 5313277 5316900 Lan3g1239 3 24529567 24531548 PCT
Lan5g0413 5 9009047 9013509 Lan3g1239 3 24529567 24531548 PCT
Lan3g1239 3 24529567 24531548 Lan15g1172 15 20324820 20328634 PCT
Lan3g1239 3 24529567 24531548 Lan3g1239 3 24529567 24531548 PCT
Lan15g1172 15 20324820 20328634 Lan3g1239 3 24529567 24531548 PCT
Lan3g1239 3 24529567 24531548 Lan10g0603 10 5313277 5316900 PCT
Lan3g1239 3 24529567 24531548 Lan5g0413 5 9009047 9013509 PCT