Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1231 ATGGAAACAATGAACAGAAGCTCATCCAACGCTACCTCTTCCTCAGACTCTTCCTCTTCAGAATCCAACCACCCCAGAAACCCAAACAAGCCTGAAAGAATCAAAGGTCCATGGAGTGCTGAAGAAGACCGTATCCTAACCCAACTCGTCGAACGATACGGGGCAAAAAACTGGTCTTTAATCAGTCGCTACATAAAAGGAAGGTCCGGTAAGTCATGCAGGCTACGGTGGTGCAACCAGCTGAGCCCCGCCGTGGAACACCGTCCCTTCTCCGCCCAAGAAGACGACACCATCATAGCCGCACATGACCAGTACGGTAACCGGTGGGCAACCATTGCGCGGTTATTACCTGGTAGAACCGATAATGCAGTGAAGAATCATTGGAATTCAACGTTGAAACGAAGAGCTAGGGATCAAAAACGTGGCTCATTTGTTGCTACAACTAGTACTTTAGGAGAGAGAGGAAATTCTTCGTCAGAGGATCCCATGACGGTGCTGACTCTTGCTCCGCCGGGTATTGATAACGGTGGCGCCGTCGAGAAGGAGAGGCAGTCGCCGGAGGAGGGTGTTCCGTCGGGGTTTTGGGATATGATGAGAGATGTTATTGCTAGAGAAGTTAGAGAATACGTATCTTCTAATTTTGCTGATAATAATTCACGTTTTCATTGA 669 0.4858 METMNRSSSNATSSSDSSSSESNHPRNPNKPERIKGPWSAEEDRILTQLVERYGAKNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDDTIIAAHDQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRARDQKRGSFVATTSTLGERGNSSSEDPMTVLTLAPPGIDNGGAVEKERQSPEEGVPSGFWDMMRDVIAREVREYVSSNFADNNSRFH* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1231 222 CDD SANT 89 132 IPR001005 -
Lan3g1231 222 MobiDBLite consensus disorder prediction 1 25 - -
Lan3g1231 222 SMART sant 34 83 IPR001005 -
Lan3g1231 222 SMART sant 86 134 IPR001005 -
Lan3g1231 222 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Lan3g1231 222 Gene3D - 88 156 - -
Lan3g1231 222 Pfam Myb-like DNA-binding domain 38 96 - -
Lan3g1231 222 PANTHER MYB PROTEIN-RELATED 1 206 - -
Lan3g1231 222 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 206 - -
Lan3g1231 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Lan3g1231 222 Gene3D - 34 86 - -
Lan3g1231 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Lan3g1231 222 CDD SANT 37 79 IPR001005 -
Lan3g1231 222 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Lan3g1231 222 MobiDBLite consensus disorder prediction 1 39 - -
Lan3g1231 222 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1231 Lan-Chr3 24482827 24483615 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1231 32 136 MYB Transcription Factor Family AT5G67300 75.238 3.43e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan3g1231 Myb_DNA-bind_6 6.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1167 15 20297945 20298795 Lan3g1231 3 24482827 24483615 LSH
Lan3g1231 3 24482827 24483615 Lan15g1167 15 20297945 20298795 PCT
Lan3g1231 3 24482827 24483615 Lan3g1231 3 24482827 24483615 PCT
Lan15g1167 15 20297945 20298795 Lan3g1231 3 24482827 24483615 PCT