Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1226 ATGCAATCCAACGGCTCTGATTCACAAGCGACGGAGCAGAATCAACAACAACGGCAAACGCCGCCGCAGCCGCAGCCTCAGGCAGTGGCAGTGCCACATCACTGGGTGCCGATGCAATACCCTGCTGCGGCGATGGTAATGCACCACCCTATGTTACCGGCTCAACATTACGCGGCGGCGCCACCCTCGCCCTACGTGCCTTACCACCATCATTACCAAAACCAGGTTTCTCCGGCGCACGTGCCTCACCATTACAATCGTCATAGTTCAAGTGCAGAGAACAAGACCATATGGATCGGTGATTTGCATCATTGGATGGATGAAAATTATCTCCACCGTTGTTTCGCTTCCACCACCGAGATTTCTTCCATTAAGGTTATTCGCAATAAACAGACTGGTCTATCAGAGGGATATGGATTTGTTGAATTCTATTCACACAGCACAGCTAAGAAGGTTCTAGAGAATTATGCTGGAATTTTGATGCCCAACGCCGACCAACTTTTTCGCCTGAACTGGGCAACATTTAGCGCAGGGGACAAGCGATCCGATAATGTTCCACATCTTTCGATTTTTGTAGGAGATTTAGCTGCAGATGTCACAGATAGCTTATTGCATGAAACTTTTTCTAGTAAATATCCTTCTGTTAAAGCTGCAAAGGTTGTTTTTGATGCCAATAATGGGCGTTCAAAGGGTTATGGTTTCGTCCGATTCGGTGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTACCAGGCCTATGCGCATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGTAGGACAGGGAAATAGCACATCAGGCCAATCTGAAGCTGATTCTACCAACACAACTATATTTGTTGGAGGACTCGACCCTAGTGTTACAGCAGAGGATCTTAGGCACCCCTTCTCTCAGTATGGTGAGATATTTTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCCAACAGAAATAATGCAGAAGATGCTTTGCAGAAGCTGGATGGAACAACCATTGGCAAGCAAACTATTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAACAATTTAGAGTGGATTTCGGTAGTCCCTGGAATGGAGCATATTATGGGGCATATTATGGGGCCTCTATTTATGATGGTTATGGATATGCTATGTCAGCTACTCATGACCCAAGTATATATGCTGCTACCTATGGGACTTACCCTATTTATGGAGGCCAACAACAACAAGTAAGCTGA 1284 0.4556 MQSNGSDSQATEQNQQQRQTPPQPQPQAVAVPHHWVPMQYPAAAMVMHHPMLPAQHYAAAPPSPYVPYHHHYQNQVSPAHVPHHYNRHSSSAENKTIWIGDLHHWMDENYLHRCFASTTEISSIKVIRNKQTGLSEGYGFVEFYSHSTAKKVLENYAGILMPNADQLFRLNWATFSAGDKRSDNVPHLSIFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANNGRSKGYGFVRFGDDNERSQAMTEMNGVYCSTRPMRIGAATPRKSSGYQQVGQGNSTSGQSEADSTNTTIFVGGLDPSVTAEDLRHPFSQYGEIFSVKIPVGKGCGFVQFANRNNAEDALQKLDGTTIGKQTIRLSWGRNPANKQFRVDFGSPWNGAYYGAYYGASIYDGYGYAMSATHDPSIYAATYGTYPIYGGQQQQVS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1226 427 MobiDBLite consensus disorder prediction 265 291 - -
Lan3g1226 427 MobiDBLite consensus disorder prediction 268 291 - -
Lan3g1226 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 175 IPR000504 GO:0003723
Lan3g1226 427 SUPERFAMILY RNA-binding domain, RBD 171 280 IPR035979 GO:0003676
Lan3g1226 427 CDD RRM1_SECp43_like 96 176 - -
Lan3g1226 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 425 - -
Lan3g1226 427 MobiDBLite consensus disorder prediction 1 28 - -
Lan3g1226 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Lan3g1226 427 SMART rrm1_1 96 171 IPR000504 GO:0003723
Lan3g1226 427 SMART rrm1_1 189 263 IPR000504 GO:0003723
Lan3g1226 427 SMART rrm1_1 294 361 IPR000504 GO:0003723
Lan3g1226 427 MobiDBLite consensus disorder prediction 1 24 - -
Lan3g1226 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 161 IPR000504 GO:0003723
Lan3g1226 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 359 IPR000504 GO:0003723
Lan3g1226 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 254 IPR000504 GO:0003723
Lan3g1226 427 Gene3D - 188 263 IPR012677 -
Lan3g1226 427 Gene3D - 94 174 IPR012677 -
Lan3g1226 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 365 IPR000504 GO:0003723
Lan3g1226 427 CDD RRM2_SECp43_like 188 266 - -
Lan3g1226 427 CDD RRM3_NGR1_NAM8_like 292 363 - -
Lan3g1226 427 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 425 - -
Lan3g1226 427 SUPERFAMILY RNA-binding domain, RBD 70 175 IPR035979 GO:0003676
Lan3g1226 427 Gene3D - 272 371 IPR012677 -
Lan3g1226 427 SUPERFAMILY RNA-binding domain, RBD 284 395 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1226 Lan-Chr3 24442201 24445862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1226 97 373 Eukaryotic Initiation Factors Gene Family AT4G34110 28.975 2.44e-28 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0610 10 5430586 5434342 Lan3g1226 3 24442201 24445862 LSH
Lan5g0408 5 8874678 8878280 Lan3g1226 3 24442201 24445862 LSH
Lan10g0610 10 5430586 5434342 Lan3g1226 3 24442201 24445862 PCT
Lan5g0408 5 8874678 8878280 Lan3g1226 3 24442201 24445862 PCT
Lan3g1226 3 24442201 24445862 Lan3g1226 3 24442201 24445862 PCT
Lan3g1226 3 24442201 24445862 Lan10g0610 10 5430586 5434342 PCT
Lan3g1226 3 24442201 24445862 Lan5g0408 5 8874678 8878280 PCT