Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1217 ATGGCTCTTCTTCTAGACAATAACTGTGAAAGCATTTTATTCCCTCTTGATTCCAACAAAACCGTACCTGCTCCATTCCTCACCAAAACATACCAACTCGTCGATGATCCAGCCACCGATCACATCGTTTCTTGGGGCCAAGACGACACCACTTTCGTTGTTTGGCGTCCACCTGAGTTCGCCAGAGATCTTCTCCCTAACTACTTCAAACACAACAACTTCTCTAGCTTCGTTCGACAGCTCAATACATATGGTTTTAGAAAGATTGTACCAGACAGATGGGAGTTTGCGAATGAATTATTCAAGAAAGGAGAGAAGCACTTGCTATGTGAGATTCATAGAAGAAAAACGGCGCAGCCTCAACAAGTTTCCACGACCCATCATCATGATTCTTCACTAGGAATCAACGTTCCTTCTTTCTTTCCCTTCACCAGTAGAGTCAGCATTTCTCCACCCTATGACTCCGATGAACAACCCAATTGGTGTGACTCTCCGCCACCCACTTCACTCATCAACGTAGGTGCTGCTAACTATAACAGTTCGGTTACGGCGCTATCCGAGGATAATGAAAGGCTTAGGAGGAATAATAATATGCTTATGTCGGAACTTGCACACATGAAGAAGCTTTATAATGACATCATCTACTTTGTTCAGAACCATGTCAAGCATGTAGCTCCTAGTAACACTTACTCACCTTCTTCTTTTCTACCTTGCAATGCACCACAGCAACAAGTAGCTTCTAATGTTTCAGTGGTGCAAAGGCCAATGAACCAGCTTTTGGGTTATTATTCTACTACCACAAACCCTAAGCAATCATTTCAACCTCAACCTCAACCTCAACCTCAAGCACAAGCACATACTTTGAACTCTCCCATCAACACTTCAAGGGGTTCAGTGACTGTAGTTGAAGGGCATAGTAGTAATACCAGCAAGACTAAGCTTTTTGGAGTGTTCCTACAATCCAAGAAAAGGGTGCACCCTGAGTATGGTTCTAATTTTATTAATTCAGAGACCAACAAGACTCGTTTGGTTTTGGAAAAAGATGACTTGGGCTTGAATCTCATGCCTCCTAATTCTTCTTATTAG 1086 0.4263 MALLLDNNCESILFPLDSNKTVPAPFLTKTYQLVDDPATDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQPQQVSTTHHHDSSLGINVPSFFPFTSRVSISPPYDSDEQPNWCDSPPPTSLINVGAANYNSSVTALSEDNERLRRNNNMLMSELAHMKKLYNDIIYFVQNHVKHVAPSNTYSPSSFLPCNAPQQQVASNVSVVQRPMNQLLGYYSTTTNPKQSFQPQPQPQPQAQAHTLNSPINTSRGSVTVVEGHSSNTSKTKLFGVFLQSKKRVHPEYGSNFINSETNKTRLVLEKDDLGLNLMPPNSSY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1217 361 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan3g1217 361 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan3g1217 361 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan3g1217 361 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan3g1217 361 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan3g1217 361 MobiDBLite consensus disorder prediction 263 296 - -
Lan3g1217 361 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Lan3g1217 361 PANTHER BNAC06G00310D PROTEIN 14 356 - -
Lan3g1217 361 Coils Coil 175 209 - -
Lan3g1217 361 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan3g1217 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 356 IPR027725 -
Lan3g1217 361 Gene3D - 18 117 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1217 Lan-Chr3 24371198 24372921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1217 19 355 HSF AT1G46264 58.000 5.26e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan3g1217 HSF_DNA-bind 4.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1217 3 24371198 24372921 Lan3g1217 3 24371198 24372921 PCT