Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1214 ATGCAAGGACAGAGAGGTGCAGTTGGTTCCATGCCTGAAACCTTTGAATTTGATTGCGGATCTACATCAAGTAATCCTACTATGGATCAGCAGACTTGCTGGAATAATGTGCGGAGTAATGCTGAAAACCAAATACCTGAATACATGCTTTCTCCGAGTGATATTAACTCAGTTTATGTGAATTCTATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTTGGTGAGCCAAGTTCCGGTAATACAGCGAATGAGATTAACAATAATGAACAGAATAGAGAACTTCAATGGTCGTCATCAATCAATGTTGGCGTATTATCTGGTCCAAGACTAGAAGAAAGATGCCTTGAACCAACCAATGCTCTTTTGCTGGATAACATCATTACAGGTCCCACACATATGCATAGCTCCAATTCTCATCCAATTTCCGAGAATCTCAACTTAAATTCAGGTATAGCAGACAGTGGCAGTGATAATAGTCAACAGCTGGATCACCATAACTTGCACAAGTCTAGCCGATCAGTAAATGAACATACCCCACCTAGTATTGGTTCCGGTTCTTTCCTAATTCCTACCGAAAATAACGGCTTCTTGGTAGAAGATACTGATGGCAGGCCAGGTTGTTCTCTAGACACTCGCCGTGTACCTTGTAAAAGAAAGGCCGTCGAAGGAAGTGATGGTCAATCTTCAGATAGTGGAAGTTCTAGCTACACACAGCATGGTGATGGTAGTGCTTGGCATCCTCTTCCCACCCAGGACAATGCTCGGAGCAGTTTAAGCAGAGCTATTTCAGCAGAACAACTAAACGCAAGACTTGGCCTAGGCATAGGGGATGAAGCCTCTGAAAGTATTCCTAATTCAAATGTTGCAGGAAACTCGGAGAGCTTGTACCGGAATTTTCGTTTGAGGATAAATCCTTCAAACCCACAAAGTTCCACTCCCCCCACTGCATTCTCAACTGGGAGTGTGATTAGGCATTCTGGTGCTTTTTCATTCTCTTCGACGCCACAAAGGTTTCATCCTGTTGATAATTCTTCGAACTTGAGATCAGCACCGCCAATTGATAATATGATTCCTACAAGCCAGCCACCTATAATCCATGTTCCCGCGTTGCCAAGAAATAGGCAATCATATAGATGGAGTGGTGGTTCTAGTTCAAGAAGCATCCAATCATTAAACTCAATTATATGTCCAGATAGGGATAATTTACCACAAGAGGGTGCAAGCTCAGGAAGTATGTCTAGAAATACTTTAGAACACCCAGTATTTGTACCTGCATCTAATTTAAGAAATTTGGTTCAAAATCCAGCAATTAGAGGTTCAAGTAGTGCAAACTTAAGTATTCCAGGAAATGTTGCTTCTTCTTCGCGAACTGCATTGAATGCAGCTACCAATCCATCATCTGCCTCAACCTGGGCTTCTCGTCCTAATCCTTCAGAGCATCCCCGAAGATTAGCGGAATATGTCCGCCGATCCTTGTTTCCGCCTGGTTCCGAGGCTACTGGAGGTCCTAGCAATAATCACTCTTCCTTGCAATCTGGTCCTTCTGCATCTGAATCGAGGGCTTTGTCATCGGGGGCACACCCAAGATCAGCTTTGTGGTTGGAGAGGCAAGGTGATAGTGACCTTGGAATACCCCATTCATTACGAACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGAATTGTATCTGAGCTCCGCAATGTTTTGGGTCTTATGCGCAGGGGTGGGAATCTGCGATTTGAGGATGTTATGATCCTTGACCAATCAGTACTTTCTGGGATGGCTGATATTCATGATAGGCATCGGGATATGCGACTTGATGTAGATAACATGTCTTATGAGGAGTTATTGGCTTTAGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCATATTGAAACTTTTGAAGCACAAGAAGTATGTTGCTGAAACAGGATCTGAGATAGATGCAGAACCCTGTTGTGTTTGTCAGGAAAATTATGTTGATGGAGATGATATTGGGACACTCAATTGCAGGCACGATTTCCATAGCAACTGTATTAAACAGTGGCTAATGCATAAGAATTTGTGCCCGGTTTGTAAGACAACGGGCTTGGCAACATGA 2121 0.4309 MQGQRGAVGSMPETFEFDCGSTSSNPTMDQQTCWNNVRSNAENQIPEYMLSPSDINSVYVNSINHEWQNLSGWSFGEPSSGNTANEINNNEQNRELQWSSSINVGVLSGPRLEERCLEPTNALLLDNIITGPTHMHSSNSHPISENLNLNSGIADSGSDNSQQLDHHNLHKSSRSVNEHTPPSIGSGSFLIPTENNGFLVEDTDGRPGCSLDTRRVPCKRKAVEGSDGQSSDSGSSSYTQHGDGSAWHPLPTQDNARSSLSRAISAEQLNARLGLGIGDEASESIPNSNVAGNSESLYRNFRLRINPSNPQSSTPPTAFSTGSVIRHSGAFSFSSTPQRFHPVDNSSNLRSAPPIDNMIPTSQPPIIHVPALPRNRQSYRWSGGSSSRSIQSLNSIICPDRDNLPQEGASSGSMSRNTLEHPVFVPASNLRNLVQNPAIRGSSSANLSIPGNVASSSRTALNAATNPSSASTWASRPNPSEHPRRLAEYVRRSLFPPGSEATGGPSNNHSSLQSGPSASESRALSSGAHPRSALWLERQGDSDLGIPHSLRTLAVASEGSSRIVSELRNVLGLMRRGGNLRFEDVMILDQSVLSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKHKKYVAETGSEIDAEPCCVCQENYVDGDDIGTLNCRHDFHSNCIKQWLMHKNLCPVCKTTGLAT* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1214 706 MobiDBLite consensus disorder prediction 1 30 - -
Lan3g1214 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Lan3g1214 706 MobiDBLite consensus disorder prediction 333 354 - -
Lan3g1214 706 Pfam Ring finger domain 659 700 IPR001841 -
Lan3g1214 706 MobiDBLite consensus disorder prediction 135 190 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 135 163 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 16 30 - -
Lan3g1214 706 CDD RING-H2_TTC3 658 700 - -
Lan3g1214 706 SMART ring_2 659 699 IPR001841 -
Lan3g1214 706 MobiDBLite consensus disorder prediction 227 243 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 495 530 - -
Lan3g1214 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Lan3g1214 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 705 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 396 417 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 500 526 - -
Lan3g1214 706 SUPERFAMILY RING/U-box 658 702 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 219 259 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 458 483 - -
Lan3g1214 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 705 IPR045191 GO:0061630
Lan3g1214 706 MobiDBLite consensus disorder prediction 458 478 - -
Lan3g1214 706 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1214 Lan-Chr3 24341295 24345983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1214 1 706 C3H Transcription Factor Family AT2G15530 33.201 1.10e-81 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0503 3 4721224 4726543 Lan3g1214 3 24341295 24345983 PCT
Lan3g1214 3 24341295 24345983 Lan3g0503 3 4721224 4726543 PCT