Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1194 ATGGATCGGATTAAGGGTCCGTGGAGCCCCGAAGAGGACGAAGCGTTACGACGGTTAGTTGAAAATCACGGTCCTAGAAACTGGACTCTGATAAGTAAATCTATACCTGGTCGATCTGGAAAATCGTGCCGTTTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGGCCGTTTACTCCTGAAGAGGATGAAGCTATAATCAAAGCACATGCTGATTACGGGAATAGGTGGGCCACCATTGCTCGTCAACTTAACGGTCGCACCGATAACGCTATCAAGAATCATTGGAATTCAACTCTTAAGAGGAAATTCTCCACCGTATCGGAGAGCGTTGAGGATCAACGACCTTTGAAAAAATCTGTTAGTCTTGGTCCGGGTCCTACCGTTTCTGGTAGTGGATCCGATTTGAGTGAATCCAGTTTAGCCGCACCGGTTTTGAGACCACTTTTAGATACAGCAACTGTTCATGTTGTGGAGAGTGCTTCCATTGCTGTTGATCCACTCACATCGTTAAGTTTATCTCTGCCCGGATCCGATCCAAACGGGTTCGGGTCGAATAAGTTATCCGGGTCGGGTCCAGAAGTGGGTGTTGTGGTAGCTGAGAAGAACAGTGAAGGGCGTGAGGAAATGAGTAAGGAGAAGCAATTGTTCAGCGAAGAGTTCTTGACGGTGTTACAAGAAATGGTTAGAACCGAAGTGAGGAATTTCATGACTGAGGTTGACCATAATAATGGTCTCTCTTCGCAAACCCAAGCAATTAGAAACGCTGTGATGAAGCATATTGGAACTGGCAAGGTTGAGTGA 810 0.4741 MDRIKGPWSPEEDEALRRLVENHGPRNWTLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDEAIIKAHADYGNRWATIARQLNGRTDNAIKNHWNSTLKRKFSTVSESVEDQRPLKKSVSLGPGPTVSGSGSDLSESSLAAPVLRPLLDTATVHVVESASIAVDPLTSLSLSLPGSDPNGFGSNKLSGSGPEVGVVVAEKNSEGREEMSKEKQLFSEEFLTVLQEMVRTEVRNFMTEVDHNNGLSSQTQAIRNAVMKHIGTGKVE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1194 269 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Lan3g1194 269 Gene3D - 58 124 - -
Lan3g1194 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Lan3g1194 269 CDD SANT 7 49 IPR001005 -
Lan3g1194 269 MobiDBLite consensus disorder prediction 107 140 - -
Lan3g1194 269 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 238 - -
Lan3g1194 269 PANTHER MYB PROTEIN-RELATED 1 238 - -
Lan3g1194 269 SMART sant 4 53 IPR001005 -
Lan3g1194 269 SMART sant 56 104 IPR001005 -
Lan3g1194 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Lan3g1194 269 CDD SANT 59 102 IPR001005 -
Lan3g1194 269 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lan3g1194 269 Pfam Myb-like DNA-binding domain 8 66 - -
Lan3g1194 269 Gene3D - 4 56 - -
Lan3g1194 269 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1194 Lan-Chr3 24193854 24194946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1194 1 269 MYB Transcription Factor Family AT4G37260 46.835 5.48e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan3g1194 Myb_DNA-bind_6 1.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1194 3 24193854 24194946 Lan3g1194 3 24193854 24194946 PCT