Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0796 ATGGACATATCTCAGTGGGCACAGGGTACTGGAGTGGTTAAACCTATGGAAGGTTCTTCAAAACCACCTCCAACTCAACCTCCTATGATAGAGAGATCAAGGGCAAGGCCTCAAAAGGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAGCAAACACAAAATTCTGTTACTACAATAACTATAACCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCTGTTGGTGGTGGTTCAAGAAAGAACAAAAGACCCTTTCCTTCATCATCAACAACATCTTCACAACAAGGTCCATCAAATAAGAAGCTTTCTCAAAACCCAAAGATCCATCAAGGCCAAGATCTTAACCTAGCTTATCCACCACTAACTGAGGACTATAACACCTTATCAAAATTTATTGAGGTTCCTTACAACACTGAATTAGATAAGACTCGTAACCACCTTCATAATCCAAGTTCTTCAGCTATGGAACTTCTCAAAAATGGGATCACTACTTCTTTCATGCCCATGAGCTTGTCAGACTCAAGCACAATGTATAACTCAACTGGTTTCCCTCCTTTGCAAGAGTTCTTTAAGCCTGGCCTAAACTTCAGTCTTGAAGGGTTTGAGAATGGCTACCATGGAATTCATCATCAAGATGGTGCTAATGGTGCAAGGATCTTGTTTCCTCCTCCTGAGAATTTGAAGCAACAGGTTCCAAGCAGTGCTGAGTTTCATGAGCAGAATAGAAATCAAGGGGATTCAAGTGGATATTGGAATGGAATGTTAGGTGGAGGATCATGGTAG 825 0.4145 MDISQWAQGTGVVKPMEGSSKPPPTQPPMIERSRARPQKDQALNCPRCNSANTKFCYYNNYNLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPFPSSSTTSSQQGPSNKKLSQNPKIHQGQDLNLAYPPLTEDYNTLSKFIEVPYNTELDKTRNHLHNPSSSAMELLKNGITTSFMPMSLSDSSTMYNSTGFPPLQEFFKPGLNFSLEGFENGYHGIHHQDGANGARILFPPPENLKQQVPSSAEFHEQNRNQGDSSGYWNGMLGGGSW* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0796 274 MobiDBLite consensus disorder prediction 247 264 - -
Lan3g0796 274 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Lan3g0796 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 270 IPR045174 GO:0003700|GO:0006355
Lan3g0796 274 MobiDBLite consensus disorder prediction 247 274 - -
Lan3g0796 274 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Lan3g0796 274 MobiDBLite consensus disorder prediction 1 44 - -
Lan3g0796 274 Pfam Dof domain, zinc finger 40 97 IPR003851 GO:0003677|GO:0006355
Lan3g0796 274 MobiDBLite consensus disorder prediction 84 130 - -
Lan3g0796 274 MobiDBLite consensus disorder prediction 96 125 - -
Lan3g0796 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 27 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0796 Lan-Chr3 14844804 14846602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0796 30 274 C2C2-Dof Transcription Factor Family AT3G61850 41.367 1.61e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan3g0796 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0796 - - lang:109326143 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0725 15 16121334 16122669 Lan3g0796 3 14844804 14846602 LSH
Lan14g0559 14 11806776 11807730 Lan3g0796 3 14844804 14846602 LSH