Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0503 ATGCAAGAGCAGAGAAGTACAATTGGTTCCTTGCCCGAAACCATAGAATTTGATTATGGATCTACATCGAGTAACGCTACAGTTAATCCGCCAATTTGCTTGAATAATATGCAGAATCCTGCAGAAAATCGCATACCTGAATATTTACTTTCCCCCGCTCCCAGTGAGATTAACCCATCTTATGTGAATTATATAAATCGGGACTGGCAGAACACAAGTGGATGGAGCTCAGGTGAGCCAAGTTCCAGTAATACACAGAAAGAGGTTAACAACAATGAGCAGAAAAGAGAACTGGGATGCTTATCTTCAGTAAGTGCTAGTGCTATAGCTGGTCCAATACGAGAGAGGCGCTTTAGACCAGTCAATGCTCTTTCTTTGGGGAATGTCATTACAAGTTCTGTGCCTATGCACAACTCCAATTCTCATTTGGGGTCCCAGAGTCTTAATTTAAATGCAAGCTTAGCAAATAGTGGCAGTAGTAATGGCCATCATGCGGAACATCCTAACTTGCCCAAGTCCAGTGGACCAATAAATGAGCATATTCCACCTATTACTAGTTCTGGTTCTTTTATGCTTCCTTCTGAATGTAACAGCTTTTTGATTGAGGGTAGTGATGGTAGGACAGGTTGTTCTCGAGATACTCGCCGTGTATCTTGTAAAAGAAAGGCCGTTGAACAAGACTTTGGACAATCTTCAGATGTTGGAAGTTGTAGTAGCTACAGCCAGAATAGAGATGGTAGTGCTTGGAACACACTTCCTACTCAGAATTATGCAGGGAGCAGTTTCAGCAGATCTACTTCAGCAGAACAGATAAACGCAAGACTTGGCCTGAGTATGGGTAATGTTGCCTCTGAAAGTGTTCTGGATACAAATGTTGCAGGAAACTCAGAAAGCTTCCCCAGAAATTGTCGTTTGCGGATAAATCCTTCAAGCCAACAAAATTCCACTCCTCCCGCTGCATTCCCAAGTGGGAGTGTGATTAGGAATACTGGTGTTTCTTCGTCCACTCCAATGTTGCAAAGGATTCATCCTGTTGATAATTCTTGGGACTTGAGGTCAGTACCACCAGTTGATACTATGATTCCTCAAAGCCAGCCCCTTCTAGTTCATGTTCCTGCTTTACCAAGGAATGCACAATCATTTAGGTGGAGTGGCGGATCTAGCTCAACAAACAACCATTCATCAAACTCGGTTATAAGTGCAACTAGGGACAATCTACCACAACAGGAAGGTAGCTCAAGAAGTATGGCTAGAAACATTATAGAACAATCGATGTTTTTTCCTCCAACCAATTTAAGAAATTTGGTTCGAAATCCCACAATTAGATCTTCGAGTGGTGCAAATTTAAGCATCCCAGGAAATGTTGCTTCATCCCAGCCTGGGTCAAATTCTGCTATCAATCCACCATCTGTCTCACCATGGGTTTCTCATCCTAATCCTCAACAGCATTATCCACGCAGGCTAGCTGAATATGTTCACCGGCCCGTGTTTTCTCCTGGTTCCGAGGCTGCTGGAAATCCAATCAGCAATTATTCTTCCTTGCGTGGTCCAGCTAATTCATCTGTGTTGTCATCGGGGGTGGTACATCTGGGGTCATCTTCAGTATTGGAGAGGCCAGGTGATAGTGAATATGCAATTGCTCCTTCATTGCGATCATTGACTGGTGCAGGAAGTGGTAGAATATCTGAGGTATCCAATCAGCTCCGCGATGTGTTGGGCCGCATGCGTAGGGGTAGGAACCTGCGGCTCGAGGATGTTATGATCCTCAACCAGTCATTGTTTCCTGGAATAGCTGATAGTCATGATCGGCACAGGGATATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAAGAACGCATTGGAAATGTATGTGTTGGATTGAGTGAAGAAACCGTATTGAAACATTTGAAACAGAAGAAGTATTCAGTTGAAGCAGGATCTCAGCATGAGGCAGAACCCTGTTGCATTTGTCAGGAGGAGTATAAGGACAGAGACAACATGGGATCGCTGAATTGCGGGCATGACTTCCATATGGACTGTGTAAAACAATGGCTAATGCGTAAGAACCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATAA 2124 0.4379 MQEQRSTIGSLPETIEFDYGSTSSNATVNPPICLNNMQNPAENRIPEYLLSPAPSEINPSYVNYINRDWQNTSGWSSGEPSSSNTQKEVNNNEQKRELGCLSSVSASAIAGPIRERRFRPVNALSLGNVITSSVPMHNSNSHLGSQSLNLNASLANSGSSNGHHAEHPNLPKSSGPINEHIPPITSSGSFMLPSECNSFLIEGSDGRTGCSRDTRRVSCKRKAVEQDFGQSSDVGSCSSYSQNRDGSAWNTLPTQNYAGSSFSRSTSAEQINARLGLSMGNVASESVLDTNVAGNSESFPRNCRLRINPSSQQNSTPPAAFPSGSVIRNTGVSSSTPMLQRIHPVDNSWDLRSVPPVDTMIPQSQPLLVHVPALPRNAQSFRWSGGSSSTNNHSSNSVISATRDNLPQQEGSSRSMARNIIEQSMFFPPTNLRNLVRNPTIRSSSGANLSIPGNVASSQPGSNSAINPPSVSPWVSHPNPQQHYPRRLAEYVHRPVFSPGSEAAGNPISNYSSLRGPANSSVLSSGVVHLGSSSVLERPGDSEYAIAPSLRSLTGAGSGRISEVSNQLRDVLGRMRRGRNLRLEDVMILNQSLFPGIADSHDRHRDMRLDVDNMSYEELLALEERIGNVCVGLSEETVLKHLKQKKYSVEAGSQHEAEPCCICQEEYKDRDNMGSLNCGHDFHMDCVKQWLMRKNLCPICKTTGLAT* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0503 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Lan3g0503 707 MobiDBLite consensus disorder prediction 151 186 - -
Lan3g0503 707 CDD RING-H2_TTC3 659 701 - -
Lan3g0503 707 MobiDBLite consensus disorder prediction 73 92 - -
Lan3g0503 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Lan3g0503 707 MobiDBLite consensus disorder prediction 151 167 - -
Lan3g0503 707 MobiDBLite consensus disorder prediction 444 479 - -
Lan3g0503 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 704 IPR013083 -
Lan3g0503 707 SUPERFAMILY RING/U-box 650 703 - -
Lan3g0503 707 Pfam Ring finger domain 660 701 IPR001841 -
Lan3g0503 707 MobiDBLite consensus disorder prediction 444 482 - -
Lan3g0503 707 MobiDBLite consensus disorder prediction 380 414 - -
Lan3g0503 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Lan3g0503 707 MobiDBLite consensus disorder prediction 308 341 - -
Lan3g0503 707 SMART ring_2 660 700 IPR001841 -
Lan3g0503 707 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0503 Lan-Chr3 4721224 4726543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0503 218 707 C3H Transcription Factor Family AT2G15530 35.782 1.64e-68 236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0444 10 3190238 3194915 Lan3g0503 3 4721224 4726543 LSH
Lan3g0503 3 4721224 4726543 Lan3g1214 3 24341295 24345983 PCT
Lan3g1214 3 24341295 24345983 Lan3g0503 3 4721224 4726543 PCT