Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0502 ATGGCGCAGAATCAGAGTCCTCAAAACGGTGTCGTTTCTGGTGCTCCGAACGCGAACACCGTTGCGACGTCTTTGTACGTTGGAGATCTTGACTTTAATGTCATTGATTCTCAGCTCTATGATCTGTTCAACCAAGTTGGACAAGTTGTTTCGGTTAGGGTTTGTCGTGACTTAACCACGCATCGATCATTAGGTTACGGTTATGTTAACTATAGTAACTCTCAGGATGCGGTAAGAGCATTGGATGTGCTGAATTTTACTCCACTGAATAACAAACCTATTAGGGTCATGTATTCTCGTAGGGATCCTAGTATTCGCAAGAGTGGTACTGCAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGGCTTACACGATACATTTTCTACCTTTGGACAAATTCTTTCATGCAAAATAGAGACTGATGCTTCGGGCCAATCTAAAGGCTATGGTTTTGTTCAGTTCGACAGTGAAGAGGCTGCACAAAATGCTATCGATAAGTTGAATGGCATGCTGTTGAATGATAAGCAAGTGTATGTAGGTCATTTCCTACGGAAGCAAGATAGGGACAATGCTCTCAGCAATACAAAATTCAATAATGTCTATGTGAAAAACCTGTCAGAATCAATTACGGATGATGATCTGAATAAATTTTTTGGTGAATATGGGACCATTACTAGTTCTGTAGTAATGAGAGATGGTGATGGGAAATCAAAGGGTTTTGGTTTTGTGAACTTTGAAAACCCAGATGATGCCGCTAAAGCTGTTGAAGCACTCAATGGGAAGAAATTTGATGACAAGGAGTGGTATGTTGGTAAAGCCCAGAAAAAATCTGAACGAGAGCAAGAGCTCAAAGGACGTTTTGAGCAGAGTATAAAAGAGGTTTCTGAAAAAAATCATGGCGTGAATTTGTATCTCAAGAACTTGGATGATAGCATCGGTGATGAAAAGCTGAAAGAACTGTTCGCTGAGTTTGGAACAATTACATCATACAAGGTTATGCGAGACCCGAGTGGAGTAAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCTTCTCGAGCTCTTGCTGAGATGAATGGTAAAATGATTGCTGGCAAACCTCTATATGTTGCTCTTGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCTCAAATGAGGCCTGTTGCAATCACTCCTTCTGTTGCACCTCGAATGCAATTCTACCCTCCTGGTGCTGCTGGTTTAGGACAGCAATTTTTGTATGGGCAAGGACCCCCAGCCACAATTCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCTGGGATAAGACCTGGCAGTGGTCCAATGCCAAGCTTCTTTTTACCAATGGTCCAGCAAGGCCAGCAAGGCCAGCGCCCAGCTGGACGCCGCGGAGTAGGCCCTTCGCAACAACCCCAACAACCAGTGCCAATGATGATGCAGCAGATTCCAAGGGGGCGTGTCTATCATTACCCTCCTGGTCGCAACATACAAGATGTCTCACTTACAGGAATGCCAATCCGCGATGCTGTGGGGCAGCCGATGCCCATTCAGGCTTTGGCTACTGCCCTTGCAAATGCTCCTCGTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTGTACCCGCTCGTAGATCAGCTGGAACATGATGCTGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCGGAGGTATTGCACCTTATTGAGTCACCAGATGCGCTGAAAGCTAAAGTTTCTGAAGCCATGGATGTGCTGAGAAATGTCGCTCAACAGCAAGCCAACTTACCCGCTGATCAATTTGCCTCACTCTCTCTCAATGACAATCTTGTGGCTTAG 1887 0.4462 MAQNQSPQNGVVSGAPNANTVATSLYVGDLDFNVIDSQLYDLFNQVGQVVSVRVCRDLTTHRSLGYGYVNYSNSQDAVRALDVLNFTPLNNKPIRVMYSRRDPSIRKSGTANIFIKNLDKAIDHKGLHDTFSTFGQILSCKIETDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLLNDKQVYVGHFLRKQDRDNALSNTKFNNVYVKNLSESITDDDLNKFFGEYGTITSSVVMRDGDGKSKGFGFVNFENPDDAAKAVEALNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEVSEKNHGVNLYLKNLDDSIGDEKLKELFAEFGTITSYKVMRDPSGVSRGSGFVAFSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMQFYPPGAAGLGQQFLYGQGPPATIPPQAGFGYQQQLVPGIRPGSGPMPSFFLPMVQQGQQGQRPAGRRGVGPSQQPQQPVPMMMQQIPRGRVYHYPPGRNIQDVSLTGMPIRDAVGQPMPIQALATALANAPREQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVSEAMDVLRNVAQQQANLPADQFASLSLNDNLVA* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0502 628 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 603 IPR006515 GO:0003723
Lan3g0502 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Lan3g0502 628 CDD RRM4_I_PABPs 304 382 - -
Lan3g0502 628 CDD RRM2_I_PABPs 109 185 IPR045305 -
Lan3g0502 628 Pfam Poly-adenylate binding protein, unique domain 538 602 IPR002004 GO:0003723
Lan3g0502 628 Gene3D - 187 289 IPR012677 -
Lan3g0502 628 Gene3D - 526 609 - -
Lan3g0502 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Lan3g0502 628 SMART poly_2 542 605 IPR002004 GO:0003723
Lan3g0502 628 MobiDBLite consensus disorder prediction 467 490 - -
Lan3g0502 628 SUPERFAMILY PABC (PABP) domain 488 616 IPR036053 GO:0003723
Lan3g0502 628 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Lan3g0502 628 PANTHER RNA BINDING PROTEIN 14 612 - -
Lan3g0502 628 SMART rrm2_1 203 275 IPR003954 GO:0003676
Lan3g0502 628 SMART rrm2_1 112 184 IPR003954 GO:0003676
Lan3g0502 628 SMART rrm2_1 306 378 IPR003954 GO:0003676
Lan3g0502 628 SMART rrm2_1 24 97 IPR003954 GO:0003676
Lan3g0502 628 SUPERFAMILY RNA-binding domain, RBD 202 386 IPR035979 GO:0003676
Lan3g0502 628 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 530 607 IPR002004 GO:0003723
Lan3g0502 628 PANTHER POLYADENYLATE-BINDING PROTEIN 14 612 - -
Lan3g0502 628 Coils Coil 626 628 - -
Lan3g0502 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Lan3g0502 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Lan3g0502 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Lan3g0502 628 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Lan3g0502 628 CDD RRM1_I_PABPs 24 103 - -
Lan3g0502 628 Gene3D - 111 185 IPR012677 -
Lan3g0502 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Lan3g0502 628 Gene3D - 2 110 IPR012677 -
Lan3g0502 628 SMART rrm1_1 112 184 IPR000504 GO:0003723
Lan3g0502 628 SMART rrm1_1 203 275 IPR000504 GO:0003723
Lan3g0502 628 SMART rrm1_1 306 378 IPR000504 GO:0003723
Lan3g0502 628 SMART rrm1_1 24 97 IPR000504 GO:0003723
Lan3g0502 628 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Lan3g0502 628 CDD RRM3_I_PABPs 201 280 - -
Lan3g0502 628 Gene3D - 290 391 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0502 Lan-Chr3 4707856 4712783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0502 22 627 Eukaryotic Initiation Factors Gene Family AT1G49760 69.586 0.0 837