Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0501 ATGGGTAGGTATAGTATGGAGGAGAGAGATTGTTGTTCCAAGAATTCAACAACTATGATAAGAAGCAGAAGCTGCAGAGAGAAGAGAAAGCACAAAAAAGAGAGACAAACGAAACCATACTATGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATAAGAGAACCAAACAAGAGGTCAAGGATTTGGTTGGGTTCTTACTCCACCCCTATCGCCGCCGCACGCGCCTATGACACCGCCGTGTTCTACCTGAGGGGTCCTTCAGCTGATAGACTTAACTTTCCGGAATTGTTGTTCCAAGACAAAGACGTTGACTTTTCGTGCCGGAGAGAGGATATGTCTTCTGATTCTATAAGGAAAAAGGCTACAGAAGTTGGTGCTAGAGTTGATGCTTTGCAAATAGCTCTTCATGCCTCTTCCAAGAATAATAATTCATCTTCTACCTTTTCCCTCAAGCCTGATTTGAATGAGTTTCCAAAACCTGAAGATTCCTTCAATTGA 507 0.4379 MGRYSMEERDCCSKNSTTMIRSRSCREKRKHKKERQTKPYYGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSADRLNFPELLFQDKDVDFSCRREDMSSDSIRKKATEVGARVDALQIALHASSKNNNSSSTFSLKPDLNEFPKPEDSFN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0501 168 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lan3g0501 168 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lan3g0501 168 Pfam AP2 domain 41 88 IPR001471 GO:0003700|GO:0006355
Lan3g0501 168 SMART rav1_2 39 103 IPR001471 GO:0003700|GO:0006355
Lan3g0501 168 MobiDBLite consensus disorder prediction 142 168 - -
Lan3g0501 168 CDD AP2 40 99 IPR001471 GO:0003700|GO:0006355
Lan3g0501 168 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Lan3g0501 168 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Lan3g0501 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 166 - -
Lan3g0501 168 ProSiteProfiles AP2/ERF domain profile. 39 97 IPR001471 GO:0003700|GO:0006355
Lan3g0501 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0501 Lan-Chr3 4680597 4681868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0501 33 166 AP2-EREBP Transcription Factor Family AT2G23340 58.904 2.40e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan3g0501 AP2 5.5e-11 CL0081