Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0500 ATGAATCCCCTCTCACTCCCTCTCCACAATGCTAGTTCAATACACTTCCCCTTACACCCTTTCCTTTCTTCTCTCTCCCTTATCAATCCCAATCCCAATCCCAATTTCACAACAAAACTCTCTTTCAAAAAACAACACCAACAAAATATCCAATGTTTTCAAATCAAAGCTTGTTCCTCATCCTCATCAATCGAAATCGACATGGTTCAAAACTCCCAAGGCATCTACGCTCCAAAACACAACAACAAAGTTGTAGTTCTATGGGACCTCGACAACAAACCTCCACGTGGCCCTCCCTACCCCGCCGCCGTCTCACTTAAAAACATCGCCTCCTTCTTCGGCGAAATCGTTGATATCTCCGCCTACGCCAACCGCCACGCCTTCATCCACCTTCCTCATTGGGTCATACAAGAACGGAGAGACCGTAAACAACTTGATATCATGGAACGGAAAGGTGTTGTTAATCCGACGGAGCCTTATGTTTGCAGCGTGTGTGGTCGGAAGTGTAAGACTAACTTGGACTTGAAGAAACATTTTAAGCAGCTTCATGAGCGAGAGAGGCAGAAGAAGCTTAGTCGAATGCGATCGCTTAAGGGGAAGAAGCGGCAACGGTATAAGGAGAGGTTTGTTTCTGGGAATCATAAGTATAATGAGGCTGCTAGGTCCTTGCTTAAGCCTAAGGTGGGTTATGGGCTTGCTTCTGAGTTGCGGCGAGCTGGGGTTTATGTGAAGACTGTGGAGGATAAGCCTCAGGCAGCAGATTGGGCATTGAAGAAGCAGATGCAACATTCAATGAGTAGAGGGATTGATTGGTTGGTTTTGGTTTCTGATGATTCGGATTTTTCAGATATGTTGAAGAGGGCAAGGGAGGCAAGTTTGGGGACTGTGGTTGTTGGGGATTGGGATAGGGCGTTGGGGCGGCATGCTGATTTGTGGGTTCCTTGGATTGATGTTGAGAATGGAACTGTTTCGGAGATGGATTTGATGCCCAAGAAAAGGGACAGGAGGAGGAGTGAGGGGTTTGTTGAAGAGGATGGGTTGTTTACTGTGTCAAATTTTAATGGAGATGTTGATGGAGTGGAGAATTTGGATGAGATAATGGATGATTTTGTCGGAATGAGGACTAAGTTCAATGATTTGATCATTGAAGATGATGGTGAAGAATGGGAAGAACAAGAGGATTACATGTCAGAAAGTAGCGACGATGAATACACAGAAGATGACAATGGGTTTTATTGA 1239 0.452 MNPLSLPLHNASSIHFPLHPFLSSLSLINPNPNPNFTTKLSFKKQHQQNIQCFQIKACSSSSSIEIDMVQNSQGIYAPKHNNKVVVLWDLDNKPPRGPPYPAAVSLKNIASFFGEIVDISAYANRHAFIHLPHWVIQERRDRKQLDIMERKGVVNPTEPYVCSVCGRKCKTNLDLKKHFKQLHERERQKKLSRMRSLKGKKRQRYKERFVSGNHKYNEAARSLLKPKVGYGLASELRRAGVYVKTVEDKPQAADWALKKQMQHSMSRGIDWLVLVSDDSDFSDMLKRAREASLGTVVVGDWDRALGRHADLWVPWIDVENGTVSEMDLMPKKRDRRRSEGFVEEDGLFTVSNFNGDVDGVENLDEIMDDFVGMRTKFNDLIIEDDGEEWEEQEDYMSESSDDEYTEDDNGFY* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0500 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Lan3g0500 412 MobiDBLite consensus disorder prediction 387 412 - -
Lan3g0500 412 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
Lan3g0500 412 Gene3D - 76 317 - -
Lan3g0500 412 CDD PIN_LabA-like 170 300 - -
Lan3g0500 412 PANTHER - 55 375 - -
Lan3g0500 412 PANTHER OS06G0166200 PROTEIN 55 375 - -
Lan3g0500 412 SMART c2h2final6 160 183 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0500 Lan-Chr3 4671657 4674160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0500 33 351 C2H2 Transcription Factor Family AT5G52010 71.118 4.05e-166 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g0500 None None None