Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0458 ATGGCTGGTTTTTTCTCCCTAGGTGGAAAAGGTGGTCTACAAAACAAGGACGAAGAAGAACAACACCAAAGACAAGTTAACACACCATTCTTGTTCAGAAACGAAGAGATCTATAACAGAGGGTTTGAGATATGGCCACAGTATCATAACAACAACAACAACAATACCAACAACAACTACTACTCGTGTGGCGTAGGACCTAGTAGAAGAAATAACTCATCATCATCGAATAACGTGGTGGACGACGTTGTTTCTGTGTCTGATGAGAGTACTAGATTTGGTTTCACAATGATGAGGGCTTCTGGGTCATCTAGTTTTGGTGGAATAAATTGTCAGGATTGTGGGAACCAAGCAAAGAAAGATTGTCCTCACCTTCGGTGCAGAACTTGTTGTAAGAGTCGAGGGTTTCAGTGCCAAACCCATGTTAAGAGCACTTGGGTCCCCGCTGCTAAACGCCGTGAAAAACAGCAACAACAACAACATAATGAACAACAGCAACAGCAACAGTTTTGGGGAGGAGATCATTCTTCTAGAAGAAATAGAGAAAATCAAGGTGTTGCTTCTTTATCTGTCACTACCACAGGGTTGGAGCAAGGACAATTCCCACCTGAACTGAACTCACCAGCTGTGTTTCGGTGTGTAAAAGTGAGCCCAATGGACGCACCGGATGAGAGGTATGCATACCAAACCGCAGTGAACATAGGAGGACATGTTTTCAAGGGAATTCTCTATGATCAAGGACCAGATAGTCCTTACACCATTGCTGGAGGAGCTGGTGAGGGTTCCTCGGGTGGCGGCGGCGGCGATGCTCAACAACTCACCCTCACTACCGCAACCACCACCGGCAACCCTTTTGACCCTTCCCAACTCTACCCTCCTCCATTCAATGCTTTCATGGCTGGTACGCAATTTTGCCCACCAAGATCCTAA 930 0.4602 MAGFFSLGGKGGLQNKDEEEQHQRQVNTPFLFRNEEIYNRGFEIWPQYHNNNNNNTNNNYYSCGVGPSRRNNSSSSNNVVDDVVSVSDESTRFGFTMMRASGSSSFGGINCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRREKQQQQQHNEQQQQQQFWGGDHSSRRNRENQGVASLSVTTTGLEQGQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPDSPYTIAGGAGEGSSGGGGGDAQQLTLTTATTTGNPFDPSQLYPPPFNAFMAGTQFCPPRS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0458 309 MobiDBLite consensus disorder prediction 149 185 - -
Lan3g0458 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 307 IPR007818 GO:0003700|GO:0006355
Lan3g0458 309 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 110 152 IPR006510 -
Lan3g0458 309 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 200 248 IPR006511 -
Lan3g0458 309 MobiDBLite consensus disorder prediction 160 174 - -
Lan3g0458 309 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 307 - -
Lan3g0458 309 MobiDBLite consensus disorder prediction 1 28 - -
Lan3g0458 309 Pfam Domain of unknown function (DUF702) 108 249 - -
Lan3g0458 309 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0458 Lan-Chr3 4158103 4160110 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lan3g0458 DUF702 3.4e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0544 10 4459593 4461785 Lan3g0458 3 4158103 4160110 LSH
Lan3g0458 3 4158103 4160110 Lan14g0938 14 15800717 15802848 PCT
Lan3g0458 3 4158103 4160110 Lan3g1265 3 24721907 24724303 PCT
Lan14g0938 14 15800717 15802848 Lan3g0458 3 4158103 4160110 PCT
Lan3g1265 3 24721907 24724303 Lan3g0458 3 4158103 4160110 PCT