Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1443 ATGAATAGTCAAAGAGACATGTCTGATAAGGATCCAGGTATAAAACTCTTTGGAATGAAGATTCTGGTGACTTCTCAAATGGGTTGTCAGATTTCTGCTAAATCTTCAACCATGAATGCGCGCCCATCCGAAACAGAAGTTGAAATACCTTGTGCTGGAAACTCTCAACAGCGAGAGAACTCTACTGATTTGGAGGATAGCAAGCAAGAGTCCGAACATAATGTTAAGGAAAGTGAGTCTAAAGCAAATCCCAAGCTGGTGGAAGATGATCAGGAGACTAGTAGTACAGATCAAGATAAAACCTTCAAGAAGCCGGACAAGATTCTTCACTGTCCGCGATGCAACAGTTTGGAGACCAAGTTTTGTTATTTTAATAACTACAATGTCAATCAACCTCGCCATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCCGGTGGAACAATGAGAAACGTTCCTGTGGGTGCTGGTAGACGGAAGAATAAGCACCTACCCACTCAATTCCGGCACATTATTGTAACATCTGACGGAATTCCGACTACCAGGTTTGAAACCAAAGACTCATCTGGTCATCAACTTGTCTCAACTCTTGAATCTGAGGCTGCTTTCAGATCTTCTGTAGAAAATGGTACGGTATTAAAATTTGGTCCAGATGCCCCTCTTAATGAATCCATGGAGTCAATGCTTAATCTTAGAGAGCATAAAAGAAGTGTTGATGGAAACTCTATCCATTATCATGATAATAGGGAAGACGAGCCATCCTTGTGTGGATCTTCGGTGACGAAGGCCTATACTCCAGGAAATGAGTTATCAGAACATTATAAATCAAATTCTTTGCAGTGTTACCCTGTTCCTCCATGGGCATTTCGGTCGAATCCAGGTTGGAACACCGTTGCTTCCATGGCACCAGTTCACCAGCCTTCATTGCGCATGTGTAACCCTTCTGTTTCAATGCAGTGGTGTAGCGCGCCAATGGTGGCAGTTCCGACCATGTGCCCACCAAGCATGCCCTTGCAATTTGTTCCGGCTTCGTACTGGAGTGGAACACCTGTATGGACTACCGCAGCTGGAACAGGTGCAATTGGATCAAATGGTTATCTCTCGCCTTCTTCCTCTACAAGTAACAACAGCTGCTGCTCGGGCAATGGCTCTCCGATATTGGGCAAACACACTAGAGATACTGTTTTAAGTGATGAAGAGAAATCAGACATGTGTGTTTTCGTTCCAAAGAGCCTTAGAACTGAGGAGACACACGATGCCTGA 1263 0.4434 MNSQRDMSDKDPGIKLFGMKILVTSQMGCQISAKSSTMNARPSETEVEIPCAGNSQQRENSTDLEDSKQESEHNVKESESKANPKLVEDDQETSSTDQDKTFKKPDKILHCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLPTQFRHIIVTSDGIPTTRFETKDSSGHQLVSTLESEAAFRSSVENGTVLKFGPDAPLNESMESMLNLREHKRSVDGNSIHYHDNREDEPSLCGSSVTKAYTPGNELSEHYKSNSLQCYPVPPWAFRSNPGWNTVASMAPVHQPSLRMCNPSVSMQWCSAPMVAVPTMCPPSMPLQFVPASYWSGTPVWTTAAGTGAIGSNGYLSPSSSTSNNSCCSGNGSPILGKHTRDTVLSDEEKSDMCVFVPKSLRTEETHDA* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1443 420 Coils Coil 61 81 - -
Lan20g1443 420 MobiDBLite consensus disorder prediction 31 102 - -
Lan20g1443 420 MobiDBLite consensus disorder prediction 31 60 - -
Lan20g1443 420 PANTHER CYCLIC DOF FACTOR 3-LIKE 7 420 - -
Lan20g1443 420 MobiDBLite consensus disorder prediction 61 102 - -
Lan20g1443 420 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Lan20g1443 420 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Lan20g1443 420 PANTHER CYCLIC DOF FACTOR 2 7 420 IPR045174 GO:0003700|GO:0006355
Lan20g1443 420 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1443 Lan-Chr20 21148485 21151825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1443 85 420 C2C2-Dof Transcription Factor Family AT5G39660 34.890 2.87e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan20g1443 zf-Dof 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1443 - - ccaj:109792807 585.874