Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1265 ATGTCTGAAGCTAAAGACCCAGCGATTAAGCTCTTCGGGAAAACGATTCCGGTAACGGATATTTCAACCGGATCTGGTGAATCATTCGAAGCTCCAGTTTCATCTTTTGGTGATGTTGATAAGAATCAAGGTTCTTCTATCAACTGTTCAAATAGAGAAGATGAAAAAGAAGAGAATGAGATTGAGCAGGACACGATGAGAGAAAAACCAACCGAGGATAAGAAGGAACATGTTACCCAAACATCAGAAGAGGTCACCAATGTGGATACAGCGTCAAGATCAGATGAAGCATCTGTAACCCCCTCCATTGATAAAGATGCTACTACATGGGAAACTTCAAGGACTGAAGAAGAACACGGTGAGGATTCACTAGAAAAGACGCTGAAAAAACCGGACAAGATACTGCATTGCCCCCGTTGTAAGAGCATGGACACCAAGTTCTGCTATTTCAACAATTACAATGCCAACCAACCACGTCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCAGGTGGGTCCATGAGGAATGTGCCTGTTGGTGCTGGTCGCCGGAAGAACAAGAACTCCACCACTCACTTTCATCAGATAACTGTCCCTGAAGCAGCACTCCAGAATCCTCAGTTAAATGGTGTCCATCATCCTTCCTTGGAATGTAATGGCACAGTCCTGACATTTGGGTCTGATACACCCATGTGCGAATCTATGCAATCTGTTTTGGCACTTGCTGATAAAACAGTAAACGATTGCACTAGAAATGGATTCAATGGACCAGAAGAACCAATAATTTTTGTTCCGCATATCGGTGAAGAAAAAGGGAACAATAATCCTGATAAATCTTCTGTCACGTCAGCAAAGCCAATGGAAGGTTCAACCATTGACAAGTCCCAAGAACAAGTTCTTCAGAACTTTCTGGGTTTCCCACCTCAAGTTCCCTACTTTTCCAGTGCCCCTTGGCCTTTCCCATGGAACCCAGCTCAGTGGAGCTCTCCTGTACCACCACCGGCCTTTTTCCCGTCAGGATTTACCATACCATTTTATCCTGCTGCTGCTTATTGGGGTTGTACAGTGCCGCCGGGTGCGTGGAACATGAACATCCCATGGCTAGCACAACCGTCATCCCCAAATAGTACAGCGACTGGCTCTGGTCCGAACTCCCCAACCTTGGGTAAACATTCGAGGGAAGAGAACACGGAAAAATCAAATAATGCAGCAGATGGAGATGAACATTGTCAAGGAAATAATAAAGAAAAAAACCTTTGGGTTCCGAAAACATTGAGGATTGATGACCTAGGAGAAGCAGAAAAAAGCTCTATGTGGTCAACTCTTGGGATTGAAATTAATAAGGCAGACTCATTTCCAGGTGGGGGACTCTTTAAAGCATTCCCATCAAAGCGTGATGAGAAAAATCATGCAATTCAAACCTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTCGGTCGATCAACTTTCACGAGTCCTCGTAG 1491 0.4474 MSEAKDPAIKLFGKTIPVTDISTGSGESFEAPVSSFGDVDKNQGSSINCSNREDEKEENEIEQDTMREKPTEDKKEHVTQTSEEVTNVDTASRSDEASVTPSIDKDATTWETSRTEEEHGEDSLEKTLKKPDKILHCPRCKSMDTKFCYFNNYNANQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKNSTTHFHQITVPEAALQNPQLNGVHHPSLECNGTVLTFGSDTPMCESMQSVLALADKTVNDCTRNGFNGPEEPIIFVPHIGEEKGNNNPDKSSVTSAKPMEGSTIDKSQEQVLQNFLGFPPQVPYFSSAPWPFPWNPAQWSSPVPPPAFFPSGFTIPFYPAAAYWGCTVPPGAWNMNIPWLAQPSSPNSTATGSGPNSPTLGKHSREENTEKSNNAADGDEHCQGNNKEKNLWVPKTLRIDDLGEAEKSSMWSTLGIEINKADSFPGGGLFKAFPSKRDEKNHAIQTSPVLQANPAALSRSINFHESS* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1265 496 MobiDBLite consensus disorder prediction 373 391 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 50 82 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 373 418 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 275 292 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 1 126 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 83 108 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 392 415 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 109 126 - -
Lan20g1265 496 Pfam Dof domain, zinc finger 132 189 IPR003851 GO:0003677|GO:0006355
Lan20g1265 496 MobiDBLite consensus disorder prediction 268 292 - -
Lan20g1265 496 MobiDBLite consensus disorder prediction 461 480 - -
Lan20g1265 496 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Lan20g1265 496 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Lan20g1265 496 PANTHER CYCLIC DOF FACTOR 2 1 495 IPR045174 GO:0003700|GO:0006355
Lan20g1265 496 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1265 Lan-Chr20 18758876 18762762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1265 6 496 C2C2-Dof Transcription Factor Family AT5G39660 41.586 1.83e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan20g1265 zf-Dof 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1265 - - aprc:113862693 671.774