Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0782 ATGGATATTGCTCAGTGGTCACAGGAAATGGTGATGAAGCCAATAGAAGACATAGTAGTAACAAAGCCTTCAACAGCAGCAACATCACTTGAAAGGAAGCCAAGACCACAGAAAGAAGAAGCCCTAAACTGTCCAAGGTGTCATTCAACCAACACAAAGTTCTGTTACTACAACAACTACAGCCTCACACAGCCAAGATATTTCTGCAAGACATGTAGAAGGTACTGGACTGAAGGTGGGACCCTCAGAAACATCCCTGTAGGAGGTTTATCAAGGAAGAACAAGAGATCATCTTCTAATTCTTCTTGTTCCTCAACTCCTCCCATTAAGAAGATTCCAGATCTACTCACACCTCAAAACCCTAAGGTTCATGATGGTCAAGATCTAAACTTGTCTTTCAGAAACATAACTGAATTGGTTCAACAAAATAGCAGCAATGTATCTGCCTCAGCTTCTACTACTACTACAACTAACCTTTCAGCCTTGGAGCTTTTGACTGGGATCACTTCAGGTTCAAGGGGTGTGATGAGTTCTTTCATGTCTATGCATGTTCCAGGAGATCCAAATTCAGTTTACACTTGTGGGTTTCCTCTTCAAGATTTTAAGTCAAGTTTGAGTTTCTCTTTGGATGGAATTGGAAATCCTCATGGTAGTGTTCATGAAACAAGTGGGAGGCTTTTGTTTCCATTTGAGGATTTGAAACAGGTTGCTAGCACCAGCACTACAATAATGGATCACAATAATAATGAGCAACAACATGGGGATTCATCAAATGGTGGGTATTCGACTGGAATATTTGGAGGAGGATCATGGTAA 816 0.4093 MDIAQWSQEMVMKPIEDIVVTKPSTAATSLERKPRPQKEEALNCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGLSRKNKRSSSNSSCSSTPPIKKIPDLLTPQNPKVHDGQDLNLSFRNITELVQQNSSNVSASASTTTTTNLSALELLTGITSGSRGVMSSFMSMHVPGDPNSVYTCGFPLQDFKSSLSFSLDGIGNPHGSVHETSGRLLFPFEDLKQVASTSTTIMDHNNNEQQHGDSSNGGYSTGIFGGGSW* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0782 271 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Lan20g0782 271 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 117 IPR045174 GO:0003700|GO:0006355
Lan20g0782 271 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 138 259 IPR045174 GO:0003700|GO:0006355
Lan20g0782 271 MobiDBLite consensus disorder prediction 247 271 - -
Lan20g0782 271 MobiDBLite consensus disorder prediction 91 108 - -
Lan20g0782 271 MobiDBLite consensus disorder prediction 247 265 - -
Lan20g0782 271 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Lan20g0782 271 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Lan20g0782 271 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 1 117 - -
Lan20g0782 271 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 138 259 - -
Lan20g0782 271 MobiDBLite consensus disorder prediction 86 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0782 Lan-Chr20 6677838 6679772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0782 1 271 C2C2-Dof Transcription Factor Family AT4G24060 42.442 6.43e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan20g0782 zf-Dof 5.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0782 - - pvu:PHAVU_001G080800g 292.737