Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1074 ATGCAGGAAATACATTCCATGGGAGGAGGTAGATTTTTCGGCGGCGGAGGAAACGGTGGTGGTGGTGGTGGTGGTGGCGGTGGAGGGGACAGGAGGCTGAGACCCAACCACCACCATCAAGCCTTGAAGTGCCCTCGCTGTGATTCTATCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGTCATTTCTGCAAGAACTGCCGTCGTTACTGGACTAAAGGCGGCGTCCTCCGTAACGTCCCTGTCGGCGGTGGCTGCCGCAAATCCAAACGCGCTAACAGCAACAGTATCACTAAACCCTCTAACAACAACTCCTCATCTGAAACTCCACCGGAACATAACTCCAATTCTCATTCCAGCAGTGAAAGTTCCAGCCTCACCGCCACCACCACCACCGAAGCGGTTTCAGCTCCGAACAACACCGATTCAAAGTTATTGATCCCTTCCTCAAACCCTCCATTGGAAACAGTTTCACTTGAACAACAAGGAACAGTGGATTGTGCTATTTTCTCAGAGATTGGAAGCTTCACAAGCTTGATCACTTCCACCAACGACACATTGCAGTTTGGATTTGGCCCTAACACTATCACCGATACGTCGTCGTTTCAGTGGCAGAACCAAAAGGTGTTAACCATGGTTGGTGCTGATAACGGAGAATTGAAGTTTCACGATAATCTCAACGGTGGTGGTGCTTCTTCGTTGCTTGATCAAGGTACCGTAGCCGTTGATTTATCAGTGTTGCAAAACAAAACAGGGCATGGAGGATTTGGATCGTTGGATTGGAATGGAGGTGCAGATCAAGGTTTGTTTGATCTATCTAACACCGTTGATCATACTTACTGGAATCCTCACACTACTCATTGGTCTGATCATGACAATTCTACTCTCTTTCATCTTCCATGA 918 0.4804 MQEIHSMGGGRFFGGGGNGGGGGGGGGGGDRRLRPNHHHQALKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRANSNSITKPSNNNSSSETPPEHNSNSHSSSESSSLTATTTTEAVSAPNNTDSKLLIPSSNPPLETVSLEQQGTVDCAIFSEIGSFTSLITSTNDTLQFGFGPNTITDTSSFQWQNQKVLTMVGADNGELKFHDNLNGGGASSLLDQGTVAVDLSVLQNKTGHGGFGSLDWNGGADQGLFDLSNTVDHTYWNPHTTHWSDHDNSTLFHLP* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1074 305 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Lan1g1074 305 PANTHER DOF ZINC FINGER PROTEIN 4 24 287 - -
Lan1g1074 305 MobiDBLite consensus disorder prediction 1 36 - -
Lan1g1074 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 287 IPR045174 GO:0003700|GO:0006355
Lan1g1074 305 MobiDBLite consensus disorder prediction 87 160 - -
Lan1g1074 305 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Lan1g1074 305 MobiDBLite consensus disorder prediction 94 160 - -
Lan1g1074 305 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1074 Lan-Chr1 20886275 20887803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1074 30 305 C2C2-Dof Transcription Factor Family AT5G60850 39.474 1.66e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan1g1074 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1074 - - pvu:PHAVU_003G182100g 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1074 1 20886275 20887803 Lan1g1074 1 20886275 20887803 ECH
Lan12g1220 12 18234856 18236288 Lan1g1074 1 20886275 20887803 LSH
Lan1g1074 1 20886275 20887803 Lan1g0147 1 1085569 1087094 LSH