Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0819 ATGGGTATGGTTAAATCCGTAGCGATGATGGTGGTGGTGATGATAGTGGTTATGGGTTCGGCACAGGCTCAACCCGAGGCTAAGTTCAACTGCACAACAACGAATGCCACGTGTCATGCTCTGATCGATTATACGAACCCGAATGGTACAACACTAAGCTACATCCAAACCCTCTTCGATGTTAAACAACTCATAGACATCCTAGGCGCTAACAACCTCCCTTCCAACACCACAGGCAACTACAGTGTGAGTCCAAACAAAGCAATCAAGGTCCCGTTCCCATGCAGGTGCAACAACGGGACGGGTCTGTCGGACCAGGTTCCGGTGTACACAATAAAGACCGGAGATACTTTGTACGACATAGCCACCACCACTTTTGCAGGGTTGGTCAAGTATCCCCAGATCCAGGAAGCAAATAATATATCTGATGCAAATACAATACAAGTTGAGGATAAGTTGTGGATCCCATTGCCATGTAGTTGTGATAAGGTTGGTGGGGTGAGTGTGGTTCATTATGGACACATTGTGGAGTTAGGAAATAGTGTTGAAGGGATTGCTGATGAATATGGAACTACACAACAAATACTTCTAACCCTTAATGGGATCATTGACCCTAAGACTCTTCAAGCTGGTCAACTTCTTGATGTTCCACTCAAAGCTTGTTCTTCAAATGTAAGGAATGACTCATTGGATTACCCTTTGCTTGTTGCAAATGCTACTTACATCTACACTGCTAATAACTGCATCAAATGCATGTGTGATTCTACCAACAATTTTAAATTAGAATGTGAGGCATCATCAGAATTAAAACCAAGCAATTGGTCTGTTTGTCCCTCTACTCAATGTTCAAGCAATGTATTCATTGGCAACATTACTTCTAAAGATTCATGCAATCAAACAATTTGTGACTATGCTGGTTATACCTCCAATAATATCTCTACAATTCTTCAAACTCACTCCACTTGTGCTGCAGCACCAAATGGTTCAGGTCCAAGTTCAGGAGCAACAAGAAGCACCTTAAAAGGATGGGTTTGGAGTAATCTTTTCACTGTCATTTACTTCATCTTCTTTTCTATCTATCTAGTGTGA 1089 0.4197 MGMVKSVAMMVVVMIVVMGSAQAQPEAKFNCTTTNATCHALIDYTNPNGTTLSYIQTLFDVKQLIDILGANNLPSNTTGNYSVSPNKAIKVPFPCRCNNGTGLSDQVPVYTIKTGDTLYDIATTTFAGLVKYPQIQEANNISDANTIQVEDKLWIPLPCSCDKVGGVSVVHYGHIVELGNSVEGIADEYGTTQQILLTLNGIIDPKTLQAGQLLDVPLKACSSNVRNDSLDYPLLVANATYIYTANNCIKCMCDSTNNFKLECEASSELKPSNWSVCPSTQCSSNVFIGNITSKDSCNQTICDYAGYTSNNISTILQTHSTCAAAPNGSGPSSGATRSTLKGWVWSNLFTVIYFIFFSIYLV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0819 362 CDD LysM 174 216 IPR018392 -
Lan1g0819 362 ProSiteProfiles LysM domain profile. 108 155 IPR018392 -
Lan1g0819 362 SUPERFAMILY LysM domain 109 157 IPR036779 -
Lan1g0819 362 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 319 - -
Lan1g0819 362 Pfam LysM domain 174 217 IPR018392 -
Lan1g0819 362 Pfam LysM domain 110 156 IPR018392 -
Lan1g0819 362 Gene3D LysM domain 107 164 IPR036779 -
Lan1g0819 362 SUPERFAMILY LysM domain 173 217 IPR036779 -
Lan1g0819 362 SMART LysM_2 109 156 IPR018392 -
Lan1g0819 362 SMART LysM_2 173 217 IPR018392 -
Lan1g0819 362 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 319 - -
Lan1g0819 362 ProSiteProfiles LysM domain profile. 172 216 IPR018392 -
Lan1g0819 362 CDD LysM 109 155 IPR018392 -
Lan1g0819 362 Gene3D LysM domain 170 229 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0819 Lan-Chr1 18973065 18977199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0819 9 336 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.182 1.78e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0819 - - lang:109351135 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0347 12 8334463 8338044 Lan1g0819 1 18973065 18977199 LSH