Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0147 ATGCAACAAACACATTCCATGGCTGGAGGAGGCACATTTTTCGGTGGCGGAGACAGGAGGCTCAGACCCCACCACCACCACCACCAGGCCTTGAACTGCCCTCGCTGCGACTCTCTCAACACCAAATTCTGTTACTACAACAACTACAACCTCTCTCAGCCACGTCACTTCTGCAAAAACTGCCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGCAACATCCCCGTCGGCGGTGGTTGCCGCAAATCCAAACGCTCCAACCACAACAACAACAATGATAACTCCTCTGAAACCGAAATTACTGCTCCACCGGAACATAACTCGAATTCTCATTCCAGTAGTGAAAGTTCCAGCCCCACCGCCACCACTGAAGCGGTGGTTTCAGCACCAAACACTTTCAACTCTGATTCCAACAATCGCAACGAATCAAAGTTATTGATCTGTTCCTCAAACCCTGCTTTGGAGACAGTTTCACTCAAACAACAACAACAACATGGAACGGAGGATTGTAATATTTTCTCTGAGATTGGAAGCTTCACATGCTTAATCACTTCCACCAACGACACGTTGCAGTTTGGATTCGATGCTACAACTATCCCAGATGCGTCGTCGTTTCAATGGCAGCACCAAAAAGGGTTAACAATGAACATGACTCTCACCGGTGATGACGTGGAATTGAAGTTCCCGGATAATCTCAACGGTTGTGATGCTTCGTTGCTTGATCACGGTACCGTACCCGTTGATTTATCAGGGCGCGAAGAATTTGGATCGTTGGATTTGCATGGTGATGGAGATCAAGGTTTGTTTGATCTTTCTAACACCGTTGATCATACTTACTGGACTCCTCACACTACTCACTGGTCTGATCACGATAATTCTACTCTTTTTCATCTTCCCTGA 900 0.4744 MQQTHSMAGGGTFFGGGDRRLRPHHHHHQALNCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNIPVGGGCRKSKRSNHNNNNDNSSETEITAPPEHNSNSHSSSESSSPTATTEAVVSAPNTFNSDSNNRNESKLLICSSNPALETVSLKQQQQHGTEDCNIFSEIGSFTCLITSTNDTLQFGFDATTIPDASSFQWQHQKGLTMNMTLTGDDVELKFPDNLNGCDASLLDHGTVPVDLSGREEFGSLDLHGDGDQGLFDLSNTVDHTYWTPHTTHWSDHDNSTLFHLP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0147 299 MobiDBLite consensus disorder prediction 83 138 - -
Lan1g0147 299 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Lan1g0147 299 MobiDBLite consensus disorder prediction 1 21 - -
Lan1g0147 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 281 IPR045174 GO:0003700|GO:0006355
Lan1g0147 299 PANTHER DOF ZINC FINGER PROTEIN 4 15 281 - -
Lan1g0147 299 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Lan1g0147 299 MobiDBLite consensus disorder prediction 76 138 - -
Lan1g0147 299 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0147 Lan-Chr1 1085569 1087094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0147 18 299 C2C2-Dof Transcription Factor Family AT5G60850 38.079 3.34e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan1g0147 zf-Dof 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0147 - - gmx:778097 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1220 12 18234856 18236288 Lan1g0147 1 1085569 1087094 LSH
Lan1g1074 1 20886275 20887803 Lan1g0147 1 1085569 1087094 LSH