Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0096 ATGAGAGACCCTTCAATTATGCTCTTTGGCCATAATATTTCCTTCCCCGTTTCAGAACAACAACCTCTTATTCATCATCATCATATTCATATTCCTATGCATATCCTCTCTCAACAGGACAAACTCAACTTTCACATGGATCCAGAAGCTGAAAATGCTACAAAGAAGCAAGAGGTTGATCCTCCTTCTAATACAAAAGATAGCAAGAGTTCAAGCACATCACCTGAAGCTATTGTGAATCCAAAAACTCCTTCTATAGAAGAAGAAGAAGAAGATGCTGAGAATTCAAAAAATGATAACTCGGAGAAGGAACAAAGTGATGCAGGCAACTCACAAGAGAAAACCCTGAAGAAGCCCGATAAATTGATCCCATGTCCTCGATGCAATAGCATCGATACGAAGTTCTGTTACTACAACAACTACAATGTTAATCAGCCGCGCTATTTCTGCAAAGCATGCCAGAGATACTGGACTGCAGGTGGCACTATGAGGAATGTACCAGTGGGGGCAGGACGACGAAAGAACAAGAACTCGGCTTCGAATTATCCTCATATCACAATCTCTGAGGCTCTTCAAGCAGCTAGGATTGATGCTCCTAATGGAAATCATCATCCCATGTTGAAAAGCAATGGTAGAGTCCTCAGCTTTGGATTAGATCATGCACCAATTTGTGATTCCATGACATCTGTCCTGAATCTCGGAGACAAAAATGTTGTTAATGGCGCAACAAGAAATGAGTTTCATAGCTTTGAGGATCGAAGATTTCATGTTCCTTGCAAAAGTGGGGACAATAGTACTGATAGCTTTGGCTGCTCAAATACATCTACTATTACGGTTTCATGTTCCATTGGAGAAAGTACGAAAAGTACCTTCCATGAACCGGCACTAGGGAATAATAACGGATTCATTCCTCAAGTTCCTTGGCCTTATCCATGGAATTTTCCGGTTCCCTCACCGGCCTTTTGTCCTTCAGGATATCCCTTATCATTCTATCCTGCTGCCTTTTGGAACTGTCCCTGCCCCATGCCAGGGTCTGGTCCAAATTCTCCTACATTAGGGAAACACTCAAGGGATGGTGACATTATTAACCAAGAGACTATGCTCAAAGAAGAACCGTCGAAGCAGAGAAACGGATGTGTTTTAGTTCCCAAAACGCTAAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCAATATGGGCAACATTAGGAATTAAGAATGAATCATTGAGCAAGGGAGGTATATTTAAGGCTTTTCAATCAACCAAGAAGGACGAAAAGAAACATATCGAAGCCTCTCCGATGTTGCGGGCTAACCCCGCAGCGTTCTCTAGATCCCTTGATTTTCATGAGAACTCCTGA 1362 0.4222 MRDPSIMLFGHNISFPVSEQQPLIHHHHIHIPMHILSQQDKLNFHMDPEAENATKKQEVDPPSNTKDSKSSSTSPEAIVNPKTPSIEEEEEDAENSKNDNSEKEQSDAGNSQEKTLKKPDKLIPCPRCNSIDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASNYPHITISEALQAARIDAPNGNHHPMLKSNGRVLSFGLDHAPICDSMTSVLNLGDKNVVNGATRNEFHSFEDRRFHVPCKSGDNSTDSFGCSNTSTITVSCSIGESTKSTFHEPALGNNNGFIPQVPWPYPWNFPVPSPAFCPSGYPLSFYPAAFWNCPCPMPGSGPNSPTLGKHSRDGDIINQETMLKEEPSKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESLSKGGIFKAFQSTKKDEKKHIEASPMLRANPAAFSRSLDFHENS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0096 453 MobiDBLite consensus disorder prediction 64 80 - -
Lan1g0096 453 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Lan1g0096 453 PANTHER CYCLIC DOF FACTOR 2 2 452 IPR045174 GO:0003700|GO:0006355
Lan1g0096 453 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
Lan1g0096 453 PANTHER CYCLIC DOF FACTOR 1 2 452 - -
Lan1g0096 453 Coils Coil 86 106 - -
Lan1g0096 453 MobiDBLite consensus disorder prediction 96 121 - -
Lan1g0096 453 MobiDBLite consensus disorder prediction 427 453 - -
Lan1g0096 453 MobiDBLite consensus disorder prediction 50 123 - -
Lan1g0096 453 Pfam Dof domain, zinc finger 121 177 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0096 Lan-Chr1 729575 732148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0096 2 451 C2C2-Dof Transcription Factor Family AT3G47500 44.864 3.68e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan1g0096 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0096 - - gmx:778113 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0870 12 15784501 15787102 Lan1g0096 1 729575 732148 LSH