Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0387 ATGCTAAGTAACTGTGACAAAATGGGACACATCCCTCCACCAACAACTAACGAATGGACACAGATTCATAACATAGATGATCATCTGAAGAACTCGATGGCTTCTATTACTGGTATTAGGGTTATGGAAAAACCAGGTCAAGATCTTCTTCAGCTGCAACAACAAGCACTGAAGTGCCCTCGTTGTGACTCATCAAACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGCCACTTCTGCAAAGCATGCAAACGTTACTGGACAAGAGGTGGAACTCTCAGAAACGTTCCTGTGGGTGGTGGCTGCAGAAAAAACAAGCGTGTCAAGCGTCCAAATATTGATACTACCACTCCTTCTTCTCCTCTTTCTTCAAACTCAAACCCTCCCAACAATAAAGTTGTTAGTTCAGCTGCAAATCATGTCAACCCTTTGTTATATGGGTTACCTAGTAACTCTGGTGATGTCATGAGTGCTCTTCAATTCCCAAGGTTCAGTTCTGGGTATGATCTTCATCCTCAGATGAATAACCTTGGACTAGATTTTTCATCTGAGGTTATGTCTAGTGATAATAATGGTTACAGAAATGGGTTTATTTCAAGTAACAACAACACTCTTGTTTCTACTTATAGCTCCATCTTTGGTTCTTCTTCAACTTCTACACCCTCTACTCCAGCTATGGCTTCCCTATTACTGCAACAGAAATTCATGAATGGTGGAGTGAAAGATGGTCCTGAAGGTATCAACAATTTCCAAGGGTTAATACCTGTTGAAAGGTTGCAAATGGAAGGTAATGATAATTGTAAGGGAGGGGTGATGGGTTCTTCAAAAGAAGTGAAGGGTGAAGGACAAAACAGGATGGAGTGGAATATTAATGGTGCTTCTTGCCAAAACCAGATGGAGCAAAATATGGGTTTGTTATCCCATGATCCTTCACTTTATTGGAACTCAGCAACAGCTATGGGTGCTTGGGGTGACCAGCCAAATATAAATCCTTCAGTCAGTTCTCTGATCTAG 1026 0.4152 MLSNCDKMGHIPPPTTNEWTQIHNIDDHLKNSMASITGIRVMEKPGQDLLQLQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNIDTTTPSSPLSSNSNPPNNKVVSSAANHVNPLLYGLPSNSGDVMSALQFPRFSSGYDLHPQMNNLGLDFSSEVMSSDNNGYRNGFISSNNNTLVSTYSSIFGSSSTSTPSTPAMASLLLQQKFMNGGVKDGPEGINNFQGLIPVERLQMEGNDNCKGGVMGSSKEVKGEGQNRMEWNINGASCQNQMEQNMGLLSHDPSLYWNSATAMGAWGDQPNINPSVSSLI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0387 341 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Lan19g0387 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 327 IPR045174 GO:0003700|GO:0006355
Lan19g0387 341 MobiDBLite consensus disorder prediction 116 137 - -
Lan19g0387 341 MobiDBLite consensus disorder prediction 102 137 - -
Lan19g0387 341 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Lan19g0387 341 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Lan19g0387 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0387 Lan-Chr19 4874918 4877008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0387 57 152 C2C2-Dof Transcription Factor Family AT1G28310 72.000 1.13e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan19g0387 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0387 - - gmx:778105 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0591 1 8567729 8575376 Lan19g0387 19 4874918 4877008 PCT
Lan19g0387 19 4874918 4877008 Lan1g0591 1 8567729 8575376 PCT