Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0386 ATGGAGCAAGATATAGGGCAAGGTATAGGAGGTGGAGAAAATGGAGGAGACATGAATCAACAACCTCCGCATCATCCTCCACCACCACAACAACCGCCGCAGCAATGTCCACGTTGCGACTCCATGAACACCAAGTTCTGCTACTACAACAACTATAGCCTGACGCAGCCTCGATTCTTCTGCAAAACCTGTAAGAGGTATTGGACACAAGGTGGAACTCTGAGGAACATACCTGTTGGTGGCTCTTCCCGTAAAGGGAAGCGCACTAAGCATGCTTCATCTTCGCAACTACAACTGCGACCACAACCACAAATCCAATCACACCGAGTAACACAGGAAGTGGTCCAACTCCCAAACCAGCCAAATTTGACAACTATGATGAGGCCTACTGCACCTAGGGTGGTTCAGCCAAATAGTTCTTATTACCAAGGTGGTAGTATTGGTGGTGGTGGTGGATATTTGTCTTCTTTTGCTGCAGTTCACTCAATGAACCCACCACCACAGCCTTTGGATCAGTCTCTGAATGTTATGGCATCTTCAAATTCTGGTCTTCTACCTGGCTTCAATACTGCTGCTTCTGGTTCTCTTGGCTCACAACCCTACCACCCTGGCCAAATTTACCCCCAGGGATTCTATCCAGAACATGGTTTCAATTACCCATCAAACATGGCTAATCATAGGGCACCTGATACTACTTTGTGGAATACTGTCAGCACCAGTTCTTCAATTAGTGGTAACACTCAGAACAATACTAGAGGTGGTGCCTCTTCTTCTTCTTCGGTCCCAAATCACTGGCCTAATCTTCCAGGGAATGGCTCTCATTATCAGTAA 831 0.4681 MEQDIGQGIGGGENGGDMNQQPPHHPPPPQQPPQQCPRCDSMNTKFCYYNNYSLTQPRFFCKTCKRYWTQGGTLRNIPVGGSSRKGKRTKHASSSQLQLRPQPQIQSHRVTQEVVQLPNQPNLTTMMRPTAPRVVQPNSSYYQGGSIGGGGGYLSSFAAVHSMNPPPQPLDQSLNVMASSNSGLLPGFNTAASGSLGSQPYHPGQIYPQGFYPEHGFNYPSNMANHRAPDTTLWNTVSTSSSISGNTQNNTRGGASSSSSVPNHWPNLPGNGSHYQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0386 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 209 IPR045174 GO:0003700|GO:0006355
Lan19g0386 276 MobiDBLite consensus disorder prediction 92 109 - -
Lan19g0386 276 MobiDBLite consensus disorder prediction 73 109 - -
Lan19g0386 276 MobiDBLite consensus disorder prediction 21 35 - -
Lan19g0386 276 MobiDBLite consensus disorder prediction 1 37 - -
Lan19g0386 276 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Lan19g0386 276 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Lan19g0386 276 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
Lan19g0386 276 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 25 209 - -
Lan19g0386 276 MobiDBLite consensus disorder prediction 235 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0386 Lan-Chr19 4862678 4863973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0386 27 110 C2C2-Dof Transcription Factor Family AT5G60200 60.714 2.44e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan19g0386 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0386 - - lang:109334079 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0386 19 4862678 4863973 Lan16g0150 16 1179220 1180200 LSH
Lan6g0731 6 6640774 6642559 Lan19g0386 19 4862678 4863973 PCT
Lan19g0386 19 4862678 4863973 Lan6g0731 6 6640774 6642559 PCT