Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g1019 ATGATCCAAGAACTGTTGGGTGGTGCTAGTCTCATAGCAAGAGAAAGGAAAAACTCCATTAATGGAGGAGGAGTTCTACTTCCACCCACAGTACCACCTTGTACTTCTCACTCTTCATCACAATCTCCTTCCAATTCCACAACAACCGTTACCCCCACCACTGTGGCCACAGAGAACCAAAATTTGAGGTGTCCACGATGTGATTCACCAAACACAAAGTTCTGTTACTACAACAACTACAATCTCACTCAACCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGGGGTGCTCTCAGGAATGTACCAATCGGAGGTGGCTGCCGGAAAAGCAAGAACGTGGCCGTGTCAAACTCGGCAGCGAAGGACGCCACCACAAAGATGAAGGCAGTGGCATCAGAGCTTGGAAGGTCATGTCTTGGTCCTGCAGGGTTTGTTCATGAGCTACCAACAAGTCCAAACTTATGGGGTTCTCCACAAAATACTCATCTTTTGGCTTTACTCAAACCTAGTCCACAAAACCAAAACCAAAACCCTAACCCTAGTTCCATGTCTTTCAATGATGTTGGGATCAGAGAAGGGAACTTAATGGGATATCAGTCCCACTTGATGACTGAGCCATTGATGACAAATTTGAATCCTCGAACCCTAGGGTATGATTGTGTTGGACAAGTTCCTTCATTGGGTTTTGGCAGTACATTTTGTAGAAGCAATAATCAAAATCAACAACATAATAGCAATTTTGTAGTTGGCGAACATCAAAACATGAGTGGAATTCAAGAACTTTACCACAAGCTCAGGTCATCATCATCAGGTAATTATTCCAGCGATAATAACCAAGCCATGTTTCTAGGCAACATGGCTTCTTCATCATCTTTATCCAACATTTTGGAGTCCAATTCAACTGCTGGGGTTGAATTGGGGAGCTGGACTCCGAACCTTTCTTGGTCGGATCTTCCAACAACCAATGGTGCATATCCTTAA 993 0.4451 MIQELLGGASLIARERKNSINGGGVLLPPTVPPCTSHSSSQSPSNSTTTVTPTTVATENQNLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKNVAVSNSAAKDATTKMKAVASELGRSCLGPAGFVHELPTSPNLWGSPQNTHLLALLKPSPQNQNQNPNPSSMSFNDVGIREGNLMGYQSHLMTEPLMTNLNPRTLGYDCVGQVPSLGFGSTFCRSNNQNQQHNSNFVVGEHQNMSGIQELYHKLRSSSSGNYSSDNNQAMFLGNMASSSSLSNILESNSTAGVELGSWTPNLSWSDLPTTNGAYP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g1019 330 PANTHER F-BOX FAMILY PROTEIN 33 328 - -
Lan18g1019 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 328 IPR045174 GO:0003700|GO:0006355
Lan18g1019 330 MobiDBLite consensus disorder prediction 32 54 - -
Lan18g1019 330 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Lan18g1019 330 Pfam Dof domain, zinc finger 60 116 IPR003851 GO:0003677|GO:0006355
Lan18g1019 330 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Lan18g1019 330 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g1019 Lan-Chr18 15239373 15241124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g1019 53 123 C2C2-Dof Transcription Factor Family AT5G65590 74.648 2.47e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan18g1019 zf-Dof 7.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g1019 - - vra:106766838 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0293 17 2050347 2051952 Lan18g1019 18 15239373 15241124 LSH
Lan18g1019 18 15239373 15241124 Lan6g0134 6 955031 960301 LSH